RNA id: TCONS_00001369


Basic Information

Item Value
RNA id TCONS_00001369
length 2056
RNA type mRNA
GC content 0.45
exon number 4
gene id XLOC_000868
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58613972 ~ 58618868 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTGAGCGGTATTGCAGGGGGCGCTGTGGTGATTTTCTTCTACCTTGCCGCCAAACCACTGAAGGAATAAACACTGGAGCCCGCGATGATGTTGAGCATGGAGGTGCAGGTGGACGTGAGCTGCTGTAAATCAGTAGGAACTGATCTGTCCATGCTGGATATTGAGGATTTCATCAGTCAAATCTGTCAGCTGAAGAAAGAGGTGGCGTCGCTGGAGGCCAAgctgagagaaagaggagagaaaCTCCAGCCAGAGCGTCAGGATTCGCTGTGCGGCGTCAGAGCTCAGAGATCCAGAGACGCGCAGAACTCAGAGCTCAGCCTGACTTTACTCTGTTATACTGACGCTCAGGATCATCAGAGCTCTGAGCCAGACGCTGGAGAACAGCAGACCACACTGAAGATGTGCTCCGTCAGGCTGGAGGACTGCAGGAACCTGATCCAGAGAACTGAAAACACCACAGAAGAAGACGATCAGAGAGACCAGGAGGATGATGATGTTGATAATGATGAAAATGAAaaagatgacgatgatgatgaatTTATTCCTCCAGGTGACAACACTGGATCGTCTGATGAAGAAGCGCCGTTAACTTTGAAAGGTAAGCCGAAGGTCAAGAAGAGTTTCTCCTGCACCTCCTGTGGAAAAGCATTCGCCTGTCAAAGTTATTTATTGATTCATGAAAGAAAACACTCAGAACCGAAGGTCTTCATCTGCTGGAGATGTCGTAAGTGCTTTCCAACATTACAGGAGAGAAAACTTCACCTGAAAGAGCATCTGGCAGAAAAGGAGTTCCACTGTGAACAGTGCGGGAAGAACTTTTTATTGTCTAATCAGCTAAAAGTTCACATGAAGACGCACAGCGGTGACCAGCGTGTCCAGTGTGACGTATGCAACAAATCATTCAGCACCAAAGCAAACCTGGAGGTTCATAAGAGAATCCACACGGGCGAGCGGCCGTATAAATGCCCTCACTGCAAGAAGAGCTTTAATTACAAATCCTACATGAAGAACCACATCCGCATTCACACCAACGAGAGGCCGTACCAGTGCAGCGAGTGCGGAAAAACCTTCAAAACAAACAACTCTCTAAACTCTCATCTAAAATTCCACTCTGAGGAAAAACCGCATCAGTGCAAATACTGCGACAAGCGATTCCGCAtgaaagcaaatctgaatgtccatgagaggattcacaccggagagaagccgtaccTGTGCGCCGAATGCGGGAAGAGGGTTAAAACTTCTACTGAGCTGGTTTGTCACCaaagaatccacactggagaaaaaccgtacCTGTGCAACATATGTGGGCGGAGTTTCAGTAAACCAACCATCTTAATAAACCAcatgaggactcacactggagaaagACCCTATAaatgttcacactgcgacaagacgTTTGCACGATCTGACGTGCTGAAGACCCACGAGAGGGTTcataccggagagaaaccgtaccgCTGCTCCATCTGCGAAGAGAGGTTTGCGTATTTAGGAAGTTTTCAGAGCCACCAGAAGAAACATGGAGCAGAACTAGTGGATGCGCAGATCAGCGCATGATGGAGAATTGACGACTGAGTGTTTCTGACAGCGTTTCTTCATCCTAGTCCTCAATCTCCACTGCTCTGCGTATTTTGATATTTGGAAAAGAAGTTAAAATTGTGCACTgctagctattgacttccatagtacgtTGTCATCAAAACAGTGCTGATGTGAAAGATGCTGCAAAACGCATAAGCGTAATGGTCATGTCCATTAACTGCGTGTCTACCTAGAGAAACAATGAAAAAGTAGCTCACTAGAATGGACAAACCTGTTCTTTGCGATATTATATTACCATATTAAAATacacctttaaaaataaaatttataaatcaaAAACTAAGTGTCATAAATTAAACAAGTATATGGTTGGATTTGAAAGCATCAACTACTCGAGTATGTACTGTACAAGTAAATCCAAATTTACTACACGACTGTTCGAAAAGTGCATTCTGtatcagggtgtccgcggggtctttaaaagtattaaaaggtgataa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000162460

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003268 lncRNA upstream 18205 58588220 ~ 58595767 (+) True XLOC_000865
TCONS_00003267 lncRNA upstream 25497 58586353 ~ 58588475 (+) False XLOC_000865
TCONS_00003266 lncRNA upstream 28840 58577919 ~ 58585132 (+) True XLOC_000864
TCONS_00003265 lncRNA upstream 83487 58526391 ~ 58530485 (+) True XLOC_000862
TCONS_00001323 lncRNA upstream 596608 58003615 ~ 58017364 (+) True XLOC_000829
TCONS_00003269 lncRNA downstream 27817 58646685 ~ 58669075 (+) True XLOC_000871
TCONS_00002891 lncRNA downstream 159185 58778053 ~ 58782292 (+) True XLOC_000874
TCONS_00002892 lncRNA downstream 234302 58853170 ~ 58854124 (+) False XLOC_000876
TCONS_00003270 lncRNA downstream 234493 58853361 ~ 58854377 (+) False XLOC_000876
TCONS_00003271 lncRNA downstream 234496 58853364 ~ 58854377 (+) False XLOC_000876
TCONS_00001367 mRNA upstream 485 58608978 ~ 58613487 (+) False XLOC_000867
TCONS_00001368 mRNA upstream 641 58609885 ~ 58613331 (+) True XLOC_000867
TCONS_00001365 mRNA upstream 7482 58601680 ~ 58606490 (+) False XLOC_000866
TCONS_00001366 mRNA upstream 7751 58602506 ~ 58606221 (+) True XLOC_000866
TCONS_00001364 mRNA upstream 76616 58535306 ~ 58537356 (+) True XLOC_000863
TCONS_00001372 mRNA downstream 2085 58620953 ~ 58622498 (+) True XLOC_000869
TCONS_00001373 mRNA downstream 9297 58628165 ~ 58632064 (+) True XLOC_000870
TCONS_00001374 mRNA downstream 58566 58677434 ~ 58681545 (+) True XLOC_000872
TCONS_00001375 mRNA downstream 116458 58735326 ~ 58744037 (+) True XLOC_000873
TCONS_00001376 mRNA downstream 222021 58840889 ~ 58850686 (+) True XLOC_000875
TCONS_00001335 other upstream 440383 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001304 other upstream 1258939 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001233 other upstream 3316721 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 3485393 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 4427816 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001394 other downstream 512424 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

//