RNA id: CI01000065_04672707_04680741.mRNA



Basic Information


Item Value
RNA id CI01000065_04672707_04680741.mRNA
length 1467
RNA type mRNA
GC content 0.41
exon number 3
gene id CI01000065_04672707_04680741
representative True

Chromosome Information


Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 4672639 ~ 4681582 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCATAAATAAGCTTGAAAACAATGCTTTACTTCTCAAGATTCTGTCGATCAGGAACATTTACCAAATAATGCTCTCATTGAAGACAAAGAAAATACTTAAATTGACACAAAAGATTCAGGCAGTAGTAAATCAACCCTCTGGGCGTGTGGTTGCTATGGGGAAGACACTTGTACCTGTAAGACCGACAGTCCAAAAGCCTCCTGCACACCCTATTATCCCAAACACAGTAGAAGTTGATCTAGCCAAACATGAAAAGAAGCTCTTGTTTCTTCACTGCATTCCCCTGTCATTCTCCCCGATGTGCCCCCCTCTTTTCCGCTTGCCCCGTCCTGCACGCCGCGGGGAGAATTCGTTTCAGACGGGGTGGTTCCGTCCACTTGGGGAAGACATGGTGGTGCGGTTAGACTGCTCACCCGGGCCTGTTCAAACATGCATTATCAGAAGAGTCTGGACATGGGTGATATTCTGGGAGACCGGTTCTGGCGCAGCAGCAAGAAAGGTGCTGGAGGTTAGAGGTGACACCATGACTTCTGATGGGATAGACTGCACTGGTGTCGACACTTTTTCACTTGGGACAGCTGAATCCCTGTCCCCAACTCCACTTACAGTACTAGCCATGGGCTAAGAGACTGAACTTTTTATAAGTCTGAATGTGTTATCTGCTTCCTAATTATAATGTGTGTAACTACATTTGATTGAAGGATGATCTATATCTATTATGTTTTTTTTTTATCATCTATTATATATTTTTTCCTTTTATTCTCTTTTTTTACTTGTTTTAGAGACTAAATGAAAAACAAAAACTATTTGTTGACTTCATTGTTTGCAGATATGTGGTTGGAAAGCTAAATAGTGTAGTGTGTACTTTAGAGAGGCTGTTAATAGTAGGTGTGTGTTCTGTGTGCTCAGCATGATTTGCATTCTACATCAATATTGCAAATCATATTCAACTGTTCATTCAGCAGATCGAAAGAGTATTCAGTTTAGATTCTTTAGAAGATGAGCTGAATATGAATCATAGACATCCATGCAACAAAGATGAGGCTTCCATAGCCTTGAAATGACTGACAAATTCTCATGTGGCACTCATCTGTTTTATGTTTCTGCCAATCACATCTGATTCCATTTACGTCTCCTCAGAATTTGCATCTCTTTTAGGACTGAAAGTGACTTGGACGAAGTCGTTCGAAAGTTGAAACTGAAACTTAATATGATCATTTTAAAAAAAGTAAGAATGTCTTTAATTATATTCCAGCTGACGGGTCTCTCTGTTGCCACGGACACATGCAAAACTGACCTCTGGGGCATGTCGACCTTTGTCAGCGGGCTGAAGGAGGAAGGCACGTGTTTCTAAACCCTAGTGAACACTTAACAGTGGGAGGAGAGCCAGATAATGTCTATTCTGGGCAAACTGTGCTCACATACAAAGAGCTAAAGTGATCCAAATGGAGAGCTTGGATTCTTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU306389 lncRNA upstream 146425 4515754 ~ 4526214 (+) True G270001
TU306479 lncRNA upstream 160031 4502213 ~ 4512608 (+) True G270062
TU306384 lncRNA upstream 167520 4500293 ~ 4505119 (+) True G269999
TU306344 lncRNA upstream 293137 4376057 ~ 4379502 (+) False G269967
TU306507 lncRNA downstream 28427 4710009 ~ 4714110 (+) True G270090
TU306471 lncRNA downstream 101287 4782869 ~ 4784552 (+) True G270054
TU306515 lncRNA downstream 143205 4824787 ~ 4825329 (+) True G270098
TU306517 lncRNA downstream 147078 4828660 ~ 4828880 (+) True G270100
TU306435 lncRNA downstream 186890 4868472 ~ 4870154 (+) False G270036
CI01000065_04578385_04586426.mRNA mRNA upstream 86185 4577840 ~ 4586454 (+) True CI01000065_04578385_04586426
CI01000065_04561164_04574594.mRNA mRNA upstream 97983 4561118 ~ 4574656 (+) True CI01000065_04561164_04574594
CI01000065_04547859_04555579.mRNA mRNA upstream 117060 4547859 ~ 4555579 (+) True CI01000065_04547859_04555579
CI01000065_04520939_04539169.mRNA mRNA upstream 133378 4520848 ~ 4539261 (+) True CI01000065_04520939_04539169
CI01000065_04361047_04363753.mRNA mRNA upstream 308800 4360937 ~ 4363839 (+) True CI01000065_04361047_04363753
CI01000065_04684547_04687726.mRNA mRNA downstream 1838 4683420 ~ 4687726 (+) True CI01000065_04684547_04687726
CI01000065_04723206_04763909.mRNA mRNA downstream 41624 4723206 ~ 4763975 (+) True CI01000065_04723206_04763909
CI01000065_04775143_04786346.mRNA mRNA downstream 89555 4771137 ~ 4786876 (+) True CI01000065_04775143_04786346
CI01000065_04790849_04819273.mRNA mRNA downstream 107997 4789579 ~ 4819537 (+) True CI01000065_04790849_04819273
CI01000065_04844180_04849353.mRNA mRNA downstream 162598 4844180 ~ 4849831 (+) True CI01000065_04844180_04849353
TU305478 other upstream 1119515 3552804 ~ 3553124 (+) False G269225
TU305428 other upstream 1209711 3458957 ~ 3462928 (+) True G269181
TU304991 other upstream 2034434 2608907 ~ 2638205 (+) True G268805
TU304676 other upstream 2432641 2239159 ~ 2239998 (+) True G268525
TU303653 other upstream 3589984 1082153 ~ 1082655 (+) True G267577

Expression Profile