RNA id: CI01000065_04942340_04946407.mRNA


Basic Information

Item Value
RNA id CI01000065_04942340_04946407.mRNA
length 962
RNA type mRNA
GC content 0.45
exon number 4
gene id CI01000065_04942340_04946407
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 4941876 ~ 4946407 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAAATAGGCTAATACGTGCCTTGGTTGGATGCATCGATTAAATTATACATAGACGGAACTCATGAGGAGTAGCTACAAAAGACAGCTTCAGTATTTACAATAAAGTGACAGCATGTGTGGCTCTTTACAACATCACTAACTAAAGGTGAGTACAGAGCTGAATCTAATCCAATCATTACAACTGTTAAAAACAGAACAGTTTTTAATCATGTAAATTATATTAGCTTATTCATAAGCATTTCATACTGCAGAACAGAAACGACCCATGTGAGGTCACAGAAAGCTTGCTTATAGATTGTGCTTGAGCAGTAAGATTATTTCCATTCCAACTGAATATTGGGTGAAAGGTGCACTGAGCACTCTTACTGAATGCATGATGAATGCACTTTCCATCTGTTGAACAACACTTGTTGTTTAAGTAAGACAAAGCATCATTCTGTCTGTTCATGTGCTTCAGATGATGGAGGATTTCTCAGGTCTCGCTTTACCTCCACTGTTTGGGGGTCACATTCTGGAAGCAGAGCTGGAGACGGGCGGAGTGGAGCTGGGCCCCAGCGGCAGTGAGCTTCTGGATAATGATGGGCCCCCTTCCGGCTCCGGACAGGATGGGGAAGACGAGAGGAGAGAGCTTGACAAAAGAAAGTATCAAGCTCTCAGCAAGAGGTGCAAAGAGATTGAACAGGTAAACGAGAAGATTTTGGGACGCCTTCACCAGGTCCAAAGACTGACACGCCGACTGAGGAAAGAAAGGAGGTTCCTCATGAAGACTCTGGACTCGTATGGAGATGATTACAGGACGGCTCAGCTCACCATCCCACTAGAGGATGAAGGAAAGGCTTTAGATCCTGCTCTCGCTGGTGATGAAGATGGCTCTTCTCCAGCGTTCCCTCATCAGTCAGCAGGAGGACCCAAGAAAAAGAGGCACCGGGTTCCAAAGGACAGAGAGAGAGACGCACAG

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process

KEGG:

id description
K11670 TEPT, INO80F; TCF3 fusion partner

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306530 lncRNA upstream 52997 4888647 ~ 4888879 (+) True G270113
TU306528 lncRNA upstream 53819 4887858 ~ 4888057 (+) True G270111
TU306527 lncRNA upstream 54488 4887174 ~ 4887388 (+) True G270110
TU306437 lncRNA upstream 71622 4868472 ~ 4870254 (+) False G270036
CI01000065_04922540_04936873.mRNA mRNA upstream 4850 4922540 ~ 4937026 (+) True CI01000065_04922540_04936873
CI01000065_04851961_04862931.mRNA mRNA upstream 78873 4851961 ~ 4863003 (+) True CI01000065_04851961_04862931
CI01000065_04844180_04849353.mRNA mRNA upstream 92045 4844180 ~ 4849831 (+) True CI01000065_04844180_04849353
CI01000065_04790849_04819273.mRNA mRNA upstream 122339 4789579 ~ 4819537 (+) True CI01000065_04790849_04819273
CI01000065_04775143_04786346.mRNA mRNA upstream 155000 4771137 ~ 4786876 (+) True CI01000065_04775143_04786346
TU305478 other upstream 1388752 3552804 ~ 3553124 (+) False G269225
TU305428 other upstream 1478948 3458957 ~ 3462928 (+) True G269181
TU304991 other upstream 2303671 2608907 ~ 2638205 (+) True G268805
TU304676 other upstream 2701878 2239159 ~ 2239998 (+) True G268525
TU303653 other upstream 3859221 1082153 ~ 1082655 (+) True G267577

Expression Profile