RNA id: TU302970


Basic Information

Item Value
RNA id TU302970
length 1629
RNA type TUCP
GC content 0.40
exon number 1
gene id G266932
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 43038 ~ 44666 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCAAGCTCAAACCGGTGCGCAATGTTTTGCTACGGTTTCCGGGTCGAACAACATGTTTCCTGGAAACGGTGTGCAACGGGTTTGAGATACGTTTTCTCTTGTTTGGTGGGCGTGTCAGAAATGTCAGCCCAATCAGCTGCAAGATGTATATAAACCACGCGGTATTAAAGAGACAGCTCACACAAAATGGGTATTAATGTAACATAAAAATACTATACATATTTATATATTTTGCTATAATTGTGAAGTGACACTTTCATAAACTTTCTATAGGCTACTCCTCTGATTATATGGTAAATATTACAATATCATAGCTCAACAACAGTGATCAGCAATAATGATAAGCCTAATACTCACAGTAAAAATAATAAGTCATATAGATCATAACACAGTCTCGGAGGTAAGAAGTGGATTATCCTTCACCTGAAATGTTTGTCTTTTCATCCTGAAATGCGAGGCAAATTTTGGATCACAATAATTAGGAACCACAGTTTCCACAAATCCCTTCACTCAATTGGGTTTGTTCTCTTTTATTCTGGACAGCAAGGGCAGTGACTGTAACATCGAACGTATTTTGCAGTATTATACATGCACAGACTAGTAATCAATTAAAAAATTATGTAAAAATAAAAACGGCATTAATTAGCGCCCTCTCATGGTACGTACAGTGCGTACAGCCGTACGGCTGCAGGCGCCACTGTATACCAACTTCATCAGGCCCCGACAATTCTTAAAAAAGATCACAAAGAATGGCCTTCTCAGCTGCCATAGTTGCAACTCTTGCGTCATCAGAACGGGGTGTTCAACGCACCACCGTTTCCGTTTAAAAAACGTTTTGTCGTTCAGCCCTGCTCTTCTTAATGGGAACATCGTTGATACAGAGGATGAGGAAGATGATGATGATGATGATGGACCCCTGAACCGCACAACCTTGAAGCAAGAGTGGGAGAAGATGTGCGGGTCAATCTGGCTGCTGCTGTGTCTGCTCCAAACATTCCTGTGCTCTCCATGAGCATGACCAGCGGCGCCTGCAGCTGCACGCACTGTGCGTACCATGAGAGGGCGCTAAATAATGCCGTTTTTATTTTTTACATAATTCTTAAATTGATTATTAAAATATATCTGCGCACACTTATGACATATTAAAAAAGCAAGAGAGAAATGAGAATAAATAAAGGTGTGCGTTTGTGTGTTGTAAAATCAAATGTGTGTATGTGAGTGCATGGGTGGGCCTGGGGGAAATGGGTGAAAAGAGATCTGATTGGCTATTTAGTTCGTCGCTTTTTCCACACATGAGAAATGCCATTACAGATAGTTAATGTTTAAAAACAGACTCAAAATGAGTAAATGCTCTCTAAAACAGCTAAATTTGATTGAAACATTTGCATTGAGTAGGGATGGAGAAATGAAGCCTCTTAAATCTTTAAAGCTTTTCTCTGAATGTTTCGGAAAAAGTTTCAAAGCATCAAGAGTGTCGCAAACAGTGCCTTCTTGTGGCAGGTAAAATTTACAGCAGCCATAAACCTGAGTGCGCAGCTCCGTTGTTTTATCCATTAAGCACAAACAAAAGCCTGACGACGCTAAATGTGTTTAGTTTTCTGATAATATAATTCACATATTAAAGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302969 lncRNA upstream 2486 38213 ~ 40552 (+) True G266931
TU302981 lncRNA upstream 15108 27691 ~ 27930 (+) True G266943
TU302975 lncRNA downstream 75 44741 ~ 45034 (+) True G266937
TU302971 lncRNA downstream 471 45137 ~ 46078 (+) True G266933
TU302989 lncRNA downstream 1741 46407 ~ 46727 (+) True G266951
TU302998 lncRNA downstream 13992 58658 ~ 62916 (+) True G266960
TU303004 lncRNA downstream 20922 65588 ~ 66364 (+) True G266965
CI01000065_00008351_00023809.mRNA mRNA upstream 18700 8351 ~ 24338 (+) True CI01000065_00008351_00023809
CI01000065_00001128_00004874.mRNA mRNA upstream 37854 1128 ~ 5184 (+) True CI01000065_00001128_00004874
CI01000065_00268067_00268655.mRNA mRNA downstream 223401 268067 ~ 268788 (+) True CI01000065_00268067_00268655
CI01000065_00390457_00395371.mRNA mRNA downstream 345791 390457 ~ 396151 (+) True CI01000065_00390457_00395371
CI01000065_00408239_00434714.mRNA mRNA downstream 363482 408148 ~ 435407 (+) True CI01000065_00408239_00434714
CI01000065_00466096_00487259.mRNA mRNA downstream 421310 465976 ~ 487278 (+) True CI01000065_00466096_00487259
CI01000065_00491304_00503042.mRNA mRNA downstream 446482 491148 ~ 503458 (+) True CI01000065_00491304_00503042
TU303494 other downstream 737617 782283 ~ 782879 (+) True G267432
TU303653 other downstream 1037487 1082153 ~ 1082655 (+) True G267577
TU304676 other downstream 2194493 2239159 ~ 2239998 (+) True G268525
TU304991 other downstream 2564241 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 3414291 3458957 ~ 3462928 (+) True G269181

Expression Profile