RNA id: TU303066


Basic Information

Item Value
RNA id TU303066
length 3049
RNA type TUCP
GC content 0.38
exon number 1
gene id G267024
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 43039 ~ 46087 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACGAGTGTTGACCCCAAACGAAGTAGCGGGTTAATTATTGTAATTTAAACAGTTATTACAGCACTTTTCTGATTCTTGATGTCTGTATGTTTGCTGCAGAGCTTTTGTGGCGGAGCAGGACCTGCAAGACAAGGTGACGGAGGCATTTGTGGGGAAAAGAAACCAGCAGGGATTGAACAGCGTGAAGACGAGTAAATAATGGCTGAATTTATATGTTTGGGTGAACTAACCCTTTATGATCCCAAATAGAAACTGTATGAAATGTATTTATTATAAATGCATAAATGCATTTATATTATAGTAGTGCCTTGAAAAAGTAAACTTTAAGAAATAAGCAGCTTTATTGAGTGTTTGTGCCCCAGACACTAACAAAAAAGGATTTACAAAAATCACATTTACATTTATTTACAGTTATGCTTTACCATATATGCTCGAGAGCCTGAACAGACTGTTCAAAACGCCTCACACTGATGGGTATGTAAAAAATAAACAGGAATTTTCAGCTTTTGAGCGATTCGTTACTGTTGTACACATTGTCATGTTAATTATCATTTAAATGCATTTGTTTTATTGACCACAATATTATCATTGCTATTTGTCTGAGAGGGGCACTTTTGATAAATTTCGAAAAAGGGCAGGGGCTCGAGCCCCCAAAGACCCCTCCCCCTGCACGTGCCTGCCGTGGAGTAACCTGGAGTAAAGTGTCTCGATCAAGGACACACTGGTGGAGACGCTGTGGAGATCGAACCAGCAACCTTCTGCTGACCAGCTCAGTGGTTTAGACCACTACACCACAAAAGTAAAGAAGCTACAGCAAAAATTAGCATGTAATTGTAAACATATTAAATGAAATATGGCAAGAAACAGAATGCTGACATTAATTGTAAAACGTTTTAATCTGTTTAAATGTTTTACAGGTATTTTTGGTCAGGGGCGCCTGCAGGATTTTATGCTGCTGGACTGATCGACTGTCTTTTTCCAGCTCATGCACTTAGTAAATTTGATGCACATAACTAATAGATGCTTCATGAATTTTTTGTTTTGTTTTGTTTTTTACTTTATATCTGAGCAGCTTTGTCCCGAAATGTGCGTACTGTTTTTAGAGAAACATGTGATTAACGAAAAACGAAGCCTCACATTGTTTCCAGTCACGTGAATGTTTCACTTTGTGTGTCGGAATGTTTGAACTCAGACCACTACTCTACAGGTATATGTTAGTTCAAGTCCATTTACAAACATTTTAAATATATAAGCCTGTAGCCTATATTACATTATCATATGTTATGTCAATAGTAGCTAGCCTATAAAAACAATAAAATAACAGCACAATTTACTTGCCTCAAACAACTCAGTATTAGTGTGTATATGTGTGTGTGTGTGTGTATATATATATATATATATGTTACATTTAATTTATTGCCAAACTTTAATATGTGAATTATATTATCAGAAAACTAAACACATTTAGCGTCGTCAGGCTTTTGTTTGTGCTTAATGGATAAAACAACGGAGCTGCGCACTCAGGTTTATGGCTGCTGTAAATTTTACCTGCCACAAGAAGGCACTGTTTGCGACACTCTTGATGCTTTGAAACTTTTTCCGAAACATTCAGAGAAAAGCTTTAAAGATTTAAGAGGCTTCATTTCTCCATCCCTACTCAATGCAAATGTTTCAATCAAATTTAGCTGTTTTAGAGAGCATTTACTCATTTTGAGTCTGTTTTTAAACATTAACTATCTGTAATGGCATTTCTCATGTGTGGAAAAAGCGACGAACTAAATAGCCAATCAGATCTCTTTTCACCCATTTCCCCCAGGCCCACCCATGCACTCACATACACACATTTGATTTTACAACACACAAACGCACACCTTTATTTATTCTCATTTCTCTCTTGCTTTTTTAATATGTCATAAGTGTGCGCAGATATATTTTAATAATCAATTTAAGAATTATGTAAAAAATAAAAACGGCATTATTTAGCGCCCTCTCATGGTACGCACAGTGCGTGCAGCTGCAGGCGCCGCTGGTCATGCTCATGGAGAGCACAGGAATGTTTGGAGCAGACACAGCAGCAGCCAGATTGACCCGCACATCTTCTCCCACTCTTGCTTCAAGGTTGTGCGGTTCAGGGGTCCATCATCATCATCATCATCTTCCTCATCCTCTGTATCAACGATGTTCCCATTAAGAAGAGCAGGGCTGAACGACAAAACGTTTTTTAAACGGAAACGGTGGTGCGTTGAACACCCCGTTCTGATGACGCAAGAGTTGCAACTATGGCAGCTGAGAAGGCCATTCTTTGTGATCTTTTTTAAGAATTGTCGGGGCCTGATGAAGTTGGTATACAGTGGCGCCTGCAGCCGTACGGCTGTACGCACTGTACGTACCATGAGAGGGCGCTAATTAATGCCGTTTTTATTTTTACATAATTTTTTAATTGATTACTAGTCTGTGCATGTATAATACTGCAAAATACGTTCGATGTTACAGTCACTGCCCTTGCTGTCCAGAATAAAAGAGAACAAACCCAATTGAGTGAAGGGATTTGTGGAAACTGTGGTTCCTAATTATTGTGATCCAAAATTTGCCTCGCATTTCAGGATGAAAAGACAAACATTTCAGGTGAAGGATAATCCACTTCTTACCTCCGAGACTGTGTTATGATCTATATGACTTATTATTTTTACTGTGAGTATTAGGCTTATCATTATTGCTGATCACTGTTGTTGAGCTATGATATTGTAATATTTACCATATAATCAGAGGAGTAGCCTATAGAAAGTTTATGAAAGTGTCACTTCACAATTATAGCAAAATATATAAATATGTATAGTATTTTTATGTTACATTAATACCCATTTTGTGTGAGCTGTCTCTTTAATACCGCGTGGTTTATATACATCTTGCAGCTGATTGGGCTGACATTTCTGACACGCCCACCAAACAAGAGAAAACGTATCTCAAACCCGTTGCACACCGTTTCCAGGAAACATGTTGTTCGACCCGGAAACCGTAGCAAAACATTGCGCACCGGTTTGAGCTTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303068 lncRNA downstream 2269 38211 ~ 38803 (-) True G267026
TU303070 lncRNA upstream 386 46473 ~ 46710 (-) True G267028
TU303069 lncRNA upstream 5798 51885 ~ 52167 (-) False CI01000065_00050903_00055774
TU303080 lncRNA upstream 20923 67010 ~ 67268 (-) True G267035
TU303081 lncRNA upstream 22729 68816 ~ 69021 (-) True G267036
TU303084 lncRNA upstream 27431 73518 ~ 73862 (-) True G267039
CI01000065_00036512_00040370.mRNA mRNA downstream 2669 35848 ~ 40370 (-) False CI01000065_00036512_00040370
CI01000065_00000511_00000912.mRNA mRNA downstream 42127 131 ~ 912 (-) True CI01000065_00000511_00000912
CI01000065_00050903_00055774.mRNA mRNA upstream 4299 50386 ~ 55774 (-) False CI01000065_00050903_00055774
CI01000065_00076766_00091631.mRNA mRNA upstream 30598 76685 ~ 91631 (-) True CI01000065_00076766_00091631
CI01000065_00097164_00097583.mRNA mRNA upstream 50817 96904 ~ 97590 (-) True CI01000065_00097164_00097583
CI01000065_00120723_00133111.mRNA mRNA upstream 74319 120406 ~ 133111 (-) True CI01000065_00120723_00133111
CI01000065_00253168_00255665.mRNA mRNA upstream 206604 252691 ~ 255710 (-) True CI01000065_00253168_00255665
TU303067 other upstream 7315 54287 ~ 54387 (-) True G267025
TU303798 other upstream 508264 554351 ~ 556828 (-) True G267718
TU303796 other upstream 508381 554468 ~ 556828 (-) True G267718
TU303828 other upstream 576345 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303837 other upstream 736610 783538 ~ 783661 (-) True G267748

Expression Profile