RNA id: TU302989


Basic Information

Item Value
RNA id TU302989
length 321
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G266951
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 46407 ~ 46727 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTTTTAAAACTGCATTTTCCAAAAGATGGGCAAAAATCTTACACTAAACCATGTCAAATTATCCATGTTATCCCCATGAATGAAAGTTAGAAATGTGGGTCGGGACGTTCTAAAACGCTTAACGAGGCTTAATTTACTAAGACAGAGATATTAACAGAGCAAACTCAGTAAACACCAAACTAATAAAGCATACTGTGTACAGAAAAGCAGATGAACCCAGAATATGAAGGCGACATGTTTAATTACACGTTAAGTGTTTTCCTCCCATAAAGAAAATGCTTAATGTGGCTTAATGTACACACAGTGACATTAAAANNNNN

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302971 lncRNA upstream 329 45137 ~ 46078 (+) True G266933
TU302975 lncRNA upstream 1373 44741 ~ 45034 (+) True G266937
TU302969 lncRNA upstream 5855 38213 ~ 40552 (+) True G266931
TU302981 lncRNA upstream 18477 27691 ~ 27930 (+) True G266943
TU302998 lncRNA downstream 11931 58658 ~ 62916 (+) True G266960
TU303004 lncRNA downstream 18861 65588 ~ 66364 (+) True G266965
TU303007 lncRNA downstream 21297 68024 ~ 68257 (+) True G266968
TU303008 lncRNA downstream 22695 69422 ~ 69663 (+) True G266969
TU303012 lncRNA downstream 25708 72435 ~ 72672 (+) True G266973
CI01000065_00008351_00023809.mRNA mRNA upstream 22069 8351 ~ 24338 (+) True CI01000065_00008351_00023809
CI01000065_00001128_00004874.mRNA mRNA upstream 41223 1128 ~ 5184 (+) True CI01000065_00001128_00004874
CI01000065_00268067_00268655.mRNA mRNA downstream 221340 268067 ~ 268788 (+) True CI01000065_00268067_00268655
CI01000065_00390457_00395371.mRNA mRNA downstream 343730 390457 ~ 396151 (+) True CI01000065_00390457_00395371
CI01000065_00408239_00434714.mRNA mRNA downstream 361421 408148 ~ 435407 (+) True CI01000065_00408239_00434714
CI01000065_00466096_00487259.mRNA mRNA downstream 419249 465976 ~ 487278 (+) True CI01000065_00466096_00487259
CI01000065_00491304_00503042.mRNA mRNA downstream 444421 491148 ~ 503458 (+) True CI01000065_00491304_00503042
TU302970 other upstream 1741 43038 ~ 44666 (+) True G266932
TU303494 other downstream 735556 782283 ~ 782879 (+) True G267432
TU303653 other downstream 1035426 1082153 ~ 1082655 (+) True G267577
TU304676 other downstream 2192432 2239159 ~ 2239998 (+) True G268525
TU304991 other downstream 2562180 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 3412230 3458957 ~ 3462928 (+) True G269181

Expression Profile