RNA id: TU303013


Basic Information

Item Value
RNA id TU303013
length 406
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G266974
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 73674 ~ 74079 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACATACTGCAGCTATTACAACAGCATGGCTTCGTCGTAGAGTCCAGGTGCTGAATTGGCCTGCCTGCAGTCCAGATCTTTCACTTATATAGAACATTCGGCGCATCATTAAACGAAAAATACATCAAAGACGACCACAAACTCTTCAGCAGCTGGAAACCTATATCAGGCAAGAATGGGACCAAATTTCAACACCAAAACTCCAGAAACTCATAACCTTGATGCCCAGACGTCTTCACACTGTTTTGAAAAGAAGAGGAGATGCTACACCATGGTAAACATGCCCCCGTCCCAACTATTTTGAGACCTGTAGCAGGCATCAAATTTGAAATGAGCTCATTTTGTGCATAAAATTGTAAAATTTCTCAGTTTAAACATTTGTTATGTTATCTATGTTCTATTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303012 lncRNA upstream 1002 72435 ~ 72672 (+) True G266973
TU303008 lncRNA upstream 4011 69422 ~ 69663 (+) True G266969
TU303007 lncRNA upstream 5417 68024 ~ 68257 (+) True G266968
TU303004 lncRNA upstream 7310 65588 ~ 66364 (+) True G266965
TU302998 lncRNA upstream 10758 58658 ~ 62916 (+) True G266960
TU302965 lncRNA downstream 2595 76674 ~ 85401 (+) False G266929
TU302967 lncRNA downstream 11063 85142 ~ 91647 (+) True G266929
TU303019 lncRNA downstream 42245 116324 ~ 117072 (+) True G266980
TU303021 lncRNA downstream 55971 130050 ~ 141440 (+) True G266981
TU303101 lncRNA downstream 68436 142515 ~ 142795 (+) True G267055
CI01000065_00008351_00023809.mRNA mRNA upstream 49336 8351 ~ 24338 (+) True CI01000065_00008351_00023809
CI01000065_00001128_00004874.mRNA mRNA upstream 68490 1128 ~ 5184 (+) True CI01000065_00001128_00004874
CI01000065_00268067_00268655.mRNA mRNA downstream 193988 268067 ~ 268788 (+) True CI01000065_00268067_00268655
CI01000065_00390457_00395371.mRNA mRNA downstream 316378 390457 ~ 396151 (+) True CI01000065_00390457_00395371
CI01000065_00408239_00434714.mRNA mRNA downstream 334069 408148 ~ 435407 (+) True CI01000065_00408239_00434714
CI01000065_00466096_00487259.mRNA mRNA downstream 391897 465976 ~ 487278 (+) True CI01000065_00466096_00487259
CI01000065_00491304_00503042.mRNA mRNA downstream 417069 491148 ~ 503458 (+) True CI01000065_00491304_00503042
TU302970 other upstream 29008 43038 ~ 44666 (+) True G266932
TU303494 other downstream 708204 782283 ~ 782879 (+) True G267432
TU303653 other downstream 1008074 1082153 ~ 1082655 (+) True G267577
TU304676 other downstream 2165080 2239159 ~ 2239998 (+) True G268525
TU304991 other downstream 2534828 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 3384878 3458957 ~ 3462928 (+) True G269181

Expression Profile