RNA id: TU303121


Basic Information

Item Value
RNA id TU303121
length 210
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G267075
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 190479 ~ 190688 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCTAGCTTTGATCTAAATCCCTAGGACAACACATTAGCATTTCACTAGCCTGTTAACTTGTCATCTGTGCTTACCCTCTTTTATCTCTTGCATACTCCTTTTTCTACACGTCCATTAAACAAGTGTGGTAAGCCGGAATCAGTCAACAAACATGGTGAGTCATGTCATCTTCTCCTGTTATTGTCACTTGCACTGCCTATCACATGTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303106 lncRNA upstream 35667 154606 ~ 154812 (+) True G267060
TU303101 lncRNA upstream 47684 142515 ~ 142795 (+) True G267055
TU303021 lncRNA upstream 49039 130050 ~ 141440 (+) True G266981
TU303019 lncRNA upstream 73407 116324 ~ 117072 (+) True G266980
TU302967 lncRNA upstream 98832 85142 ~ 91647 (+) True G266929
TU303127 lncRNA downstream 6004 196692 ~ 197028 (+) True G267081
TU303131 lncRNA downstream 9796 200484 ~ 200722 (+) True G267085
TU303133 lncRNA downstream 11764 202452 ~ 202692 (+) True G267087
TU303192 lncRNA downstream 82793 273481 ~ 273912 (+) True G267143
TU303207 lncRNA downstream 93211 283899 ~ 284242 (+) True G267158
CI01000065_00008351_00023809.mRNA mRNA upstream 166141 8351 ~ 24338 (+) True CI01000065_00008351_00023809
CI01000065_00001128_00004874.mRNA mRNA upstream 185295 1128 ~ 5184 (+) True CI01000065_00001128_00004874
CI01000065_00268067_00268655.mRNA mRNA downstream 77379 268067 ~ 268788 (+) True CI01000065_00268067_00268655
CI01000065_00390457_00395371.mRNA mRNA downstream 199769 390457 ~ 396151 (+) True CI01000065_00390457_00395371
CI01000065_00408239_00434714.mRNA mRNA downstream 217460 408148 ~ 435407 (+) True CI01000065_00408239_00434714
CI01000065_00466096_00487259.mRNA mRNA downstream 275288 465976 ~ 487278 (+) True CI01000065_00466096_00487259
CI01000065_00491304_00503042.mRNA mRNA downstream 300460 491148 ~ 503458 (+) True CI01000065_00491304_00503042
TU302970 other upstream 145813 43038 ~ 44666 (+) True G266932
TU303494 other downstream 591595 782283 ~ 782879 (+) True G267432
TU303653 other downstream 891465 1082153 ~ 1082655 (+) True G267577
TU304676 other downstream 2048471 2239159 ~ 2239998 (+) True G268525
TU304991 other downstream 2418219 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 3268269 3458957 ~ 3462928 (+) True G269181

Expression Profile