RNA id: TU303218


Basic Information

Item Value
RNA id TU303218
length 269
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G267169
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 289184 ~ 289452 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACGAGCTCCACCTGTGAGGCGCACCGGCCTCGAGTCTCTCACGGAGGAGCTCCGGAAGCATAAAAGGAGGAGCGACGACAGTGAAGGACGAGAGAGGACCAGGCCTGGACTTTATTTTGTTTTATTATGTTTGTGTGGCCGGCAGACGTCCGCGAGGGTCTGCCGGCATTACTTTCGTTTTGTTCTTTGTTTATTTTATTAAAGTTTATTGTTTGAATGTTCGCCGGTTCCCGCCTCCTTCTTCCCACATCTTACGAACTGTGTTACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303207 lncRNA upstream 4942 283899 ~ 284242 (+) True G267158
TU303192 lncRNA upstream 15272 273481 ~ 273912 (+) True G267143
TU303133 lncRNA upstream 86492 202452 ~ 202692 (+) True G267087
TU303131 lncRNA upstream 88462 200484 ~ 200722 (+) True G267085
TU303127 lncRNA upstream 92156 196692 ~ 197028 (+) True G267081
TU303238 lncRNA downstream 19984 309436 ~ 309827 (+) True G267189
TU303248 lncRNA downstream 31152 320604 ~ 320870 (+) True G267199
TU303259 lncRNA downstream 41730 331182 ~ 331559 (+) True G267210
TU303286 lncRNA downstream 62673 352125 ~ 352476 (+) True G267231
TU303300 lncRNA downstream 75004 364456 ~ 364664 (+) True G267245
CI01000065_00268067_00268655.mRNA mRNA upstream 20396 268067 ~ 268788 (+) True CI01000065_00268067_00268655
CI01000065_00008351_00023809.mRNA mRNA upstream 264846 8351 ~ 24338 (+) True CI01000065_00008351_00023809
CI01000065_00001128_00004874.mRNA mRNA upstream 284000 1128 ~ 5184 (+) True CI01000065_00001128_00004874
CI01000065_00390457_00395371.mRNA mRNA downstream 101005 390457 ~ 396151 (+) True CI01000065_00390457_00395371
CI01000065_00408239_00434714.mRNA mRNA downstream 118696 408148 ~ 435407 (+) True CI01000065_00408239_00434714
CI01000065_00466096_00487259.mRNA mRNA downstream 176524 465976 ~ 487278 (+) True CI01000065_00466096_00487259
CI01000065_00491304_00503042.mRNA mRNA downstream 201696 491148 ~ 503458 (+) True CI01000065_00491304_00503042
CI01000065_00506921_00509678.mRNA mRNA downstream 217469 506921 ~ 510257 (+) False CI01000065_00506921_00509678
TU302970 other upstream 244518 43038 ~ 44666 (+) True G266932
TU303494 other downstream 492831 782283 ~ 782879 (+) True G267432
TU303653 other downstream 792701 1082153 ~ 1082655 (+) True G267577
TU304676 other downstream 1949707 2239159 ~ 2239998 (+) True G268525
TU304991 other downstream 2319455 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 3169505 3458957 ~ 3462928 (+) True G269181

Expression Profile