RNA id: TU303238


Basic Information

Item Value
RNA id TU303238
length 392
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G267189
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 309436 ~ 309827 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCAAGCACTCTATGTGTGTGTGACATATTTGGTGTTGTTTGTCCTGTAGGCCACTATATTTCTAGCTTTTTATATACAGTGGGTACGGAAAGTATTCAGACCCCCTTAAATTTTTCACTCTTTGTTATATTGCAGCCATTTGCTAAAATCATTTAAGTTCATTTTTTTTCCTCATTAATGTACACACAGCACCCCATATTGACAGAAAAACACAGAATTGTTGACATTTTTGCAGATTTATTAAAAAAGAAAAACTGAAATATCACATGGTCCTAAGTATTCAGACCCTTTGCTCAGTATTTAGTAGAAGCACCCTTTTGATCTAATACAGCCATGAATCTTTTTGGGAAAGATGCAACAAGTTTTTCACACCTGGATTTGGGGATCCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303218 lncRNA upstream 19984 289184 ~ 289452 (+) True G267169
TU303207 lncRNA upstream 25194 283899 ~ 284242 (+) True G267158
TU303192 lncRNA upstream 35524 273481 ~ 273912 (+) True G267143
TU303133 lncRNA upstream 106744 202452 ~ 202692 (+) True G267087
TU303131 lncRNA upstream 108714 200484 ~ 200722 (+) True G267085
TU303248 lncRNA downstream 10777 320604 ~ 320870 (+) True G267199
TU303259 lncRNA downstream 21355 331182 ~ 331559 (+) True G267210
TU303286 lncRNA downstream 42298 352125 ~ 352476 (+) True G267231
TU303300 lncRNA downstream 54629 364456 ~ 364664 (+) True G267245
TU303303 lncRNA downstream 57638 367465 ~ 367668 (+) True G267248
CI01000065_00268067_00268655.mRNA mRNA upstream 40648 268067 ~ 268788 (+) True CI01000065_00268067_00268655
CI01000065_00008351_00023809.mRNA mRNA upstream 285098 8351 ~ 24338 (+) True CI01000065_00008351_00023809
CI01000065_00001128_00004874.mRNA mRNA upstream 304252 1128 ~ 5184 (+) True CI01000065_00001128_00004874
CI01000065_00390457_00395371.mRNA mRNA downstream 80630 390457 ~ 396151 (+) True CI01000065_00390457_00395371
CI01000065_00408239_00434714.mRNA mRNA downstream 98321 408148 ~ 435407 (+) True CI01000065_00408239_00434714
CI01000065_00466096_00487259.mRNA mRNA downstream 156149 465976 ~ 487278 (+) True CI01000065_00466096_00487259
CI01000065_00491304_00503042.mRNA mRNA downstream 181321 491148 ~ 503458 (+) True CI01000065_00491304_00503042
CI01000065_00506921_00509678.mRNA mRNA downstream 197094 506921 ~ 510257 (+) False CI01000065_00506921_00509678
TU302970 other upstream 264770 43038 ~ 44666 (+) True G266932
TU303494 other downstream 472456 782283 ~ 782879 (+) True G267432
TU303653 other downstream 772326 1082153 ~ 1082655 (+) True G267577
TU304676 other downstream 1929332 2239159 ~ 2239998 (+) True G268525
TU304991 other downstream 2299080 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 3149130 3458957 ~ 3462928 (+) True G269181

Expression Profile