RNA id: TU303259


Basic Information

Item Value
RNA id TU303259
length 378
lncRNA type intronic
GC content 0.34
exon number 1
gene id G267210
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 331182 ~ 331559 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCTCATTACACTGTATTCAGCACAAACTAGGCTACACTAATATGTGAGCAACAAGTACGTACATGTTTGTATTTTTGAGAGTATTACGTATATGCGTGGTTTTTGAAAAAACAAAAAAAAACAAAATAAGTCACTGAAATAAGGGCTAAAAATGCATACTAAATGTTTTTTTCACAAGACTTTTGGGAATTGTATATTTTAGTCTAGAGTTTTTGCTTCAAAATGATGTGGAAATTATCCTGCCTACTCGGACACAAAAAACAATGTATTGATTTTAAATTTCTAAGACACTTTTTGTTTAGGGAGCCCGTATGCGAAGAGGCATGAATCTTCATGAATAATGCTGTGATTCACACCTGAGGAGATTAAGACCCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303248 lncRNA upstream 10312 320604 ~ 320870 (+) True G267199
TU303238 lncRNA upstream 21355 309436 ~ 309827 (+) True G267189
TU303218 lncRNA upstream 41730 289184 ~ 289452 (+) True G267169
TU303207 lncRNA upstream 46940 283899 ~ 284242 (+) True G267158
TU303192 lncRNA upstream 57270 273481 ~ 273912 (+) True G267143
TU303286 lncRNA downstream 20566 352125 ~ 352476 (+) True G267231
TU303300 lncRNA downstream 32897 364456 ~ 364664 (+) True G267245
TU303303 lncRNA downstream 35906 367465 ~ 367668 (+) True G267248
TU303394 lncRNA downstream 104703 436262 ~ 436600 (+) True G267336
TU303499 lncRNA downstream 176027 507586 ~ 507799 (+) True CI01000065_00506921_00509678
CI01000065_00268067_00268655.mRNA mRNA upstream 62394 268067 ~ 268788 (+) True CI01000065_00268067_00268655
CI01000065_00008351_00023809.mRNA mRNA upstream 306844 8351 ~ 24338 (+) True CI01000065_00008351_00023809
CI01000065_00001128_00004874.mRNA mRNA upstream 325998 1128 ~ 5184 (+) True CI01000065_00001128_00004874
CI01000065_00390457_00395371.mRNA mRNA downstream 58898 390457 ~ 396151 (+) True CI01000065_00390457_00395371
CI01000065_00408239_00434714.mRNA mRNA downstream 76589 408148 ~ 435407 (+) True CI01000065_00408239_00434714
CI01000065_00466096_00487259.mRNA mRNA downstream 134417 465976 ~ 487278 (+) True CI01000065_00466096_00487259
CI01000065_00491304_00503042.mRNA mRNA downstream 159589 491148 ~ 503458 (+) True CI01000065_00491304_00503042
CI01000065_00506921_00509678.mRNA mRNA downstream 175362 506921 ~ 510257 (+) False CI01000065_00506921_00509678
TU302970 other upstream 286516 43038 ~ 44666 (+) True G266932
TU303494 other downstream 450724 782283 ~ 782879 (+) True G267432
TU303653 other downstream 750594 1082153 ~ 1082655 (+) True G267577
TU304676 other downstream 1907600 2239159 ~ 2239998 (+) True G268525
TU304991 other downstream 2277348 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 3127398 3458957 ~ 3462928 (+) True G269181

Expression Profile