RNA id: TU303500


Basic Information

Item Value
RNA id TU303500
length 232
lncRNA type intronic
GC content 0.47
exon number 1
gene id G267438
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 508182 ~ 508413 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGTAAGTGTGTGTGTGTGTGTGTGTCTGTGTTTGTAATACTGCAGATGGTAGCCACTTACACCTGCAAACGAAAGACAGCTCGTTGGCCGATGGTGCTGTTTTTCAACATGCTTGATGTCTCTGCACTGAATTCCTACGTGCTACGGTCTGACATCTGTCCAGAATGGCACTCAGGCAAAAGCTTCAAGAGAATGCTATTTCTGGAGGAGCTTCTAACAGCTCTGGTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303499 lncRNA upstream 383 507586 ~ 507799 (+) True CI01000065_00506921_00509678
TU303394 lncRNA upstream 71582 436262 ~ 436600 (+) True G267336
TU303303 lncRNA upstream 140514 367465 ~ 367668 (+) True G267248
TU303300 lncRNA upstream 143518 364456 ~ 364664 (+) True G267245
TU303286 lncRNA upstream 155706 352125 ~ 352476 (+) True G267231
TU303503 lncRNA downstream 3277 511690 ~ 512132 (+) True G267441
TU303517 lncRNA downstream 82602 591015 ~ 591219 (+) True G267454
TU303518 lncRNA downstream 83109 591522 ~ 591883 (+) True G267455
TU303520 lncRNA downstream 122823 631236 ~ 631444 (+) True G267457
TU303616 lncRNA downstream 483869 992282 ~ 992724 (+) True G267550
CI01000065_00491304_00503042.mRNA mRNA upstream 4724 491148 ~ 503458 (+) True CI01000065_00491304_00503042
CI01000065_00466096_00487259.mRNA mRNA upstream 20904 465976 ~ 487278 (+) True CI01000065_00466096_00487259
CI01000065_00408239_00434714.mRNA mRNA upstream 72775 408148 ~ 435407 (+) True CI01000065_00408239_00434714
CI01000065_00390457_00395371.mRNA mRNA upstream 112031 390457 ~ 396151 (+) True CI01000065_00390457_00395371
CI01000065_00268067_00268655.mRNA mRNA upstream 239394 268067 ~ 268788 (+) True CI01000065_00268067_00268655
CI01000065_00517483_00553268.mRNA mRNA downstream 9070 517483 ~ 553738 (+) True CI01000065_00517483_00553268
CI01000065_00581819_00588773.mRNA mRNA downstream 72462 580875 ~ 588779 (+) True CI01000065_00581819_00588773
CI01000065_00605004_00618190.mRNA mRNA downstream 95998 604411 ~ 619124 (+) True CI01000065_00605004_00618190
CI01000065_00625575_00629127.mRNA mRNA downstream 117162 625575 ~ 629294 (+) True CI01000065_00625575_00629127
CI01000065_00633526_00695106.mRNA mRNA downstream 125113 633526 ~ 695106 (+) True CI01000065_00633526_00695106
TU302970 other upstream 463516 43038 ~ 44666 (+) True G266932
TU303494 other downstream 273870 782283 ~ 782879 (+) True G267432
TU303653 other downstream 573740 1082153 ~ 1082655 (+) True G267577
TU304676 other downstream 1730746 2239159 ~ 2239998 (+) True G268525
TU304991 other downstream 2100494 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 2950544 3458957 ~ 3462928 (+) True G269181

Expression Profile