RNA id: TU303821


Basic Information

Item Value
RNA id TU303821
length 410
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id G267739
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 548000 ~ 549479 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCTGTGTGTGTGCGATTGTGTCTTTCTAACTGACTGGGTTTGGCGAAGGCTTTGTCACAGCTGGCACATTTGAACACTTTGGGTTTCTGAGAGCTGACTTTGGGTCCCTTCTTATGGACGTACTCGTGCTCCTTGAGGTGCGTGGCTCGTTTGAAGGCTTTACTGCAGACGCGGCAGACGTGGCAGCGCTCCTTCCCATGCTCCTGTCGGCAGTGTCTTCTGAGAGCGTTTGCCGTCAGCAGCATCTGACTGCAGTAGTAACACTGGTGCTTCTGCTTCGTCTCTGCTTCCTTCTCCTCTGTCTGGTGATCTATCATCTGTGAGCAGAAATCAAACACATCCACAGACCCCATCAGACGTGCATATCTGCAGCGTTTCAGGAAACGTGCTTGAATCACATGGATAAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303809 lncRNA downstream 22416 524879 ~ 525584 (-) True G267728
TU303802 lncRNA downstream 35250 512513 ~ 512750 (-) True G267722
TU303801 lncRNA downstream 35832 511694 ~ 512168 (-) True G267721
TU303473 lncRNA downstream 43519 504275 ~ 504481 (-) True G267411
TU303397 lncRNA downstream 110437 437334 ~ 437563 (-) True G267339
TU303865 lncRNA upstream 42063 591542 ~ 591749 (-) True G267770
TU303866 lncRNA upstream 45143 594622 ~ 598770 (-) True G267771
TU303873 lncRNA upstream 80725 630204 ~ 630439 (-) True G267778
TU303876 lncRNA upstream 84103 633582 ~ 637869 (-) True G267781
TU303887 lncRNA upstream 102070 651549 ~ 651778 (-) True G267786
CI01000065_00444905_00447425.mRNA mRNA downstream 100575 444680 ~ 447425 (-) True CI01000065_00444905_00447425
CI01000065_00330696_00340165.mRNA mRNA downstream 207228 330592 ~ 340772 (-) True CI01000065_00330696_00340165
CI01000065_00253168_00255665.mRNA mRNA downstream 292290 252691 ~ 255710 (-) True CI01000065_00253168_00255665
CI01000065_00120723_00133111.mRNA mRNA downstream 414889 120406 ~ 133111 (-) True CI01000065_00120723_00133111
CI01000065_00097164_00097583.mRNA mRNA downstream 450410 96904 ~ 97590 (-) True CI01000065_00097164_00097583
CI01000065_00563411_00579174.mRNA mRNA upstream 13369 562848 ~ 580083 (-) False CI01000065_00563411_00579174
CI01000065_00622545_00624625.mRNA mRNA upstream 72644 622123 ~ 624625 (-) False CI01000065_00622545_00624625
CI01000065_00768127_00769942.mRNA mRNA upstream 218093 767572 ~ 770151 (-) True CI01000065_00768127_00769942
CI01000065_00782736_00793467.mRNA mRNA upstream 233257 782736 ~ 793467 (-) False CI01000065_00782736_00793467
CI01000065_00843437_00865598.mRNA mRNA upstream 293953 843432 ~ 865598 (-) True CI01000065_00843437_00865598
TU303067 other downstream 493613 54287 ~ 54387 (-) True G267025
TU303066 other downstream 501913 43039 ~ 46087 (-) True G267024
TU303798 other upstream 4872 554351 ~ 556828 (-) True G267718
TU303796 other upstream 4989 554468 ~ 556828 (-) True G267718
TU303828 other upstream 72953 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303837 other upstream 233218 783538 ~ 783661 (-) True G267748
TU305637 other upstream 2758964 3308443 ~ 3312404 (-) False G269348

Expression Profile