RNA id: TU303517


Basic Information

Item Value
RNA id TU303517
length 205
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G267454
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 591015 ~ 591219 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGATTGCTTTCGTAGTGGAAATGCTCATGTGGTTGAATGTGTTCAAACAGCCACTAAAGACCGTCTACTCTCCTACTGACCTAACATGTAAACATTATGGGAAGAGCATGAGCCAAATGGGATTTAAAGGGGACCTATTATGCCCCTTTCACAAGATGTAATATAAGTCTCTGGTGTCTCCAGAATGTGTCTGTGAAGTTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303503 lncRNA upstream 78883 511690 ~ 512132 (+) True G267441
TU303500 lncRNA upstream 82602 508182 ~ 508413 (+) True G267438
TU303499 lncRNA upstream 83216 507586 ~ 507799 (+) True CI01000065_00506921_00509678
TU303394 lncRNA upstream 154415 436262 ~ 436600 (+) True G267336
TU303303 lncRNA upstream 223347 367465 ~ 367668 (+) True G267248
TU303518 lncRNA downstream 303 591522 ~ 591883 (+) True G267455
TU303520 lncRNA downstream 40017 631236 ~ 631444 (+) True G267457
TU303616 lncRNA downstream 401063 992282 ~ 992724 (+) True G267550
TU303620 lncRNA downstream 404663 995882 ~ 996173 (+) True G267551
TU303626 lncRNA downstream 426631 1017850 ~ 1031776 (+) True G267557
CI01000065_00581819_00588773.mRNA mRNA upstream 2236 580875 ~ 588779 (+) True CI01000065_00581819_00588773
CI01000065_00517483_00553268.mRNA mRNA upstream 37277 517483 ~ 553738 (+) True CI01000065_00517483_00553268
CI01000065_00506921_00509678.mRNA mRNA upstream 80758 506921 ~ 510257 (+) False CI01000065_00506921_00509678
CI01000065_00491304_00503042.mRNA mRNA upstream 87557 491148 ~ 503458 (+) True CI01000065_00491304_00503042
CI01000065_00466096_00487259.mRNA mRNA upstream 103737 465976 ~ 487278 (+) True CI01000065_00466096_00487259
CI01000065_00605004_00618190.mRNA mRNA downstream 13192 604411 ~ 619124 (+) True CI01000065_00605004_00618190
CI01000065_00625575_00629127.mRNA mRNA downstream 34356 625575 ~ 629294 (+) True CI01000065_00625575_00629127
CI01000065_00633526_00695106.mRNA mRNA downstream 42307 633526 ~ 695106 (+) True CI01000065_00633526_00695106
CI01000065_00750437_00764088.mRNA mRNA downstream 159218 750437 ~ 764297 (+) True CI01000065_00750437_00764088
CI01000065_00800809_00808759.mRNA mRNA downstream 208657 799876 ~ 808874 (+) True CI01000065_00800809_00808759
TU302970 other upstream 546349 43038 ~ 44666 (+) True G266932
TU303494 other downstream 191064 782283 ~ 782879 (+) True G267432
TU303653 other downstream 490934 1082153 ~ 1082655 (+) True G267577
TU304676 other downstream 1647940 2239159 ~ 2239998 (+) True G268525
TU304991 other downstream 2017688 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 2867738 3458957 ~ 3462928 (+) True G269181

Expression Profile