RNA id: TU303518


Basic Information

Item Value
RNA id TU303518
length 362
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G267455
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 591522 ~ 591883 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACTGGACGTTTCTGAATGGTTAGTGGATAAATTTATGTAGTTGCTGTGGAGTTGATTCAACTCATCCTCTAGCATGTGCCGTCATGTTAATCTTTTGTGCAAATCCAGCGTTGAATTGACCCTCGTTTGTGAAGCAGTCCGGCGTAAAATGACGGCAACAACACTCTACTACAACAACTCTTCCTCTTCTCTAAAGCAGCCCAACATGGCCTCGCCCCCTTTGTTGTGTGTTCTCGGGGGCGGGGTTTATGTAAATTTTAGGGTTAGTGATGTCACCAACCCGGGAAGAAGCTCGTTGTAGTCCCTACCAGCCGTTTGTTGTAGTCCTTAAAAAGCGATTTCTGTAAAAGAAAATATCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303517 lncRNA upstream 303 591015 ~ 591219 (+) True G267454
TU303503 lncRNA upstream 79390 511690 ~ 512132 (+) True G267441
TU303500 lncRNA upstream 83109 508182 ~ 508413 (+) True G267438
TU303499 lncRNA upstream 83723 507586 ~ 507799 (+) True CI01000065_00506921_00509678
TU303394 lncRNA upstream 154922 436262 ~ 436600 (+) True G267336
TU303520 lncRNA downstream 39353 631236 ~ 631444 (+) True G267457
TU303616 lncRNA downstream 400399 992282 ~ 992724 (+) True G267550
TU303620 lncRNA downstream 403999 995882 ~ 996173 (+) True G267551
TU303626 lncRNA downstream 425967 1017850 ~ 1031776 (+) True G267557
TU303637 lncRNA downstream 450581 1042464 ~ 1042870 (+) True G267565
CI01000065_00581819_00588773.mRNA mRNA upstream 2743 580875 ~ 588779 (+) True CI01000065_00581819_00588773
CI01000065_00517483_00553268.mRNA mRNA upstream 37784 517483 ~ 553738 (+) True CI01000065_00517483_00553268
CI01000065_00506921_00509678.mRNA mRNA upstream 81265 506921 ~ 510257 (+) False CI01000065_00506921_00509678
CI01000065_00491304_00503042.mRNA mRNA upstream 88064 491148 ~ 503458 (+) True CI01000065_00491304_00503042
CI01000065_00466096_00487259.mRNA mRNA upstream 104244 465976 ~ 487278 (+) True CI01000065_00466096_00487259
CI01000065_00605004_00618190.mRNA mRNA downstream 12528 604411 ~ 619124 (+) True CI01000065_00605004_00618190
CI01000065_00625575_00629127.mRNA mRNA downstream 33692 625575 ~ 629294 (+) True CI01000065_00625575_00629127
CI01000065_00633526_00695106.mRNA mRNA downstream 41643 633526 ~ 695106 (+) True CI01000065_00633526_00695106
CI01000065_00750437_00764088.mRNA mRNA downstream 158554 750437 ~ 764297 (+) True CI01000065_00750437_00764088
CI01000065_00800809_00808759.mRNA mRNA downstream 207993 799876 ~ 808874 (+) True CI01000065_00800809_00808759
TU302970 other upstream 546856 43038 ~ 44666 (+) True G266932
TU303494 other downstream 190400 782283 ~ 782879 (+) True G267432
TU303653 other downstream 490270 1082153 ~ 1082655 (+) True G267577
TU304676 other downstream 1647276 2239159 ~ 2239998 (+) True G268525
TU304991 other downstream 2017024 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 2867074 3458957 ~ 3462928 (+) True G269181

Expression Profile