RNA id: TU303892


Basic Information

Item Value
RNA id TU303892
length 413
lncRNA type intronic
GC content 0.44
exon number 1
gene id G267790
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 661271 ~ 661683 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGTTAAAAGCCTTCAGGTTGGCAGTCCAATCAAATATACAAGTCAAGAAGTAGTTCTGGATGACATCACTTCTGGTGGATGGCATCAGATCAGTATGGTAGTACCCTATTCTGAAAATAACCTCAATGTGTCGTGATTCAGCTTTAAGTGCTTCAAGTGCAATTAGACCATTTGGGTAGATGCGTTTATTGTCAGTGAAGGTCTGAATCTGAACATGAAAGCAACGAACGCTGGACTGAAACCTGCAAAGTGCTGCACACAACTAATCTGTGTGTGTATTTTGAGGTGTGGAAGGAGCAAGTGATTAGGACAGTAATTACAGGCCTGGACGACACACACACACACACAAATTCTTCCCATTCCACACAAGCATCTCCACTGCAGCACCGCCCCACTGCTCCATACACACGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303890 lncRNA downstream 423 657131 ~ 660848 (-) True G267789
TU303889 lncRNA downstream 5637 655416 ~ 655634 (-) True G267788
TU303887 lncRNA downstream 9493 651549 ~ 651778 (-) True G267786
TU303876 lncRNA downstream 23402 633582 ~ 637869 (-) True G267781
TU303873 lncRNA downstream 30832 630204 ~ 630439 (-) True G267778
TU303893 lncRNA upstream 4926 666609 ~ 666903 (-) True G267791
TU303952 lncRNA upstream 134573 796256 ~ 796967 (-) True G267850
TU303954 lncRNA upstream 136343 798026 ~ 798242 (-) True G267852
TU303955 lncRNA upstream 137172 798855 ~ 799073 (-) True G267853
TU303847 lncRNA upstream 149079 810762 ~ 811315 (-) True G267752
CI01000065_00622545_00624625.mRNA mRNA downstream 36646 622123 ~ 624625 (-) False CI01000065_00622545_00624625
CI01000065_00563411_00579174.mRNA mRNA downstream 81188 562848 ~ 580083 (-) False CI01000065_00563411_00579174
CI01000065_00444905_00447425.mRNA mRNA downstream 213846 444680 ~ 447425 (-) True CI01000065_00444905_00447425
CI01000065_00330696_00340165.mRNA mRNA downstream 320499 330592 ~ 340772 (-) True CI01000065_00330696_00340165
CI01000065_00253168_00255665.mRNA mRNA downstream 405561 252691 ~ 255710 (-) True CI01000065_00253168_00255665
CI01000065_00768127_00769942.mRNA mRNA upstream 105889 767572 ~ 770151 (-) True CI01000065_00768127_00769942
CI01000065_00782736_00793467.mRNA mRNA upstream 121053 782736 ~ 793467 (-) False CI01000065_00782736_00793467
CI01000065_00843437_00865598.mRNA mRNA upstream 181749 843432 ~ 865598 (-) True CI01000065_00843437_00865598
CI01000065_00869870_00870423.mRNA mRNA upstream 206755 868438 ~ 870423 (-) True CI01000065_00869870_00870423
CI01000065_00906591_00915144.mRNA mRNA upstream 243709 905392 ~ 915144 (-) True CI01000065_00906591_00915144
TU303828 other downstream 36614 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303796 other downstream 81244 554468 ~ 556828 (-) True G267718
TU303798 other downstream 97057 554351 ~ 556828 (-) True G267718
TU303067 other downstream 606884 54287 ~ 54387 (-) True G267025
TU303066 other downstream 615184 43039 ~ 46087 (-) True G267024
TU303837 other upstream 121014 783538 ~ 783661 (-) True G267748
TU305637 other upstream 2646760 3308443 ~ 3312404 (-) False G269348
TU305628 other upstream 2647105 3308788 ~ 3312404 (-) False G269348
TU305632 other upstream 2647105 3308788 ~ 3312480 (-) True G269348
TU306020 other upstream 3112197 3773880 ~ 3774294 (-) True G269679

Expression Profile