RNA id: TU303494


Basic Information

Item Value
RNA id TU303494
length 480
RNA type TUCP
GC content 0.45
exon number 2
gene id G267432
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 782283 ~ 782879 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACGGCACTGCAGAGAAATTCTCTTAATCGCTGGAGGAGCTGCTAATTGAAGAGGATGAGATGCTGCTTGTTGGGAAGGAAGTTCTTGTTGTGGATCAGATGCTGGTTGTTGGGAAGGAGGTTCTTGTGGTTGTTGTGATGCTGGTTGTTGGGAAGAAGGTTCTTGTTGTGGTTGCGATGCTGGTTTTTGGGAAGAAGGTTCTTGTTGTGGTTGCGATGCTGGTTTTTGGGAAGAAGGTTCTTGTTGTGGTTGTGATGCTGGTTTTTGGGAAGAAGGTTCTTGTGGAGGTTGTGATGCTGGTTTTTGGGAAGGAGGTTCTTGTTGTGGGTCACTTACTGACTGTGGTTTTAAAGTGCAAGTAGCTATGGGATGACTGTTGGAAAGATGCTTTTTTAGGGAACCTTTATTAATGTAAGTCTTGGGACACTGGCAGCAGTGAAAATGTCTGGCCGTTTTGCCACAGCCAATGTTACAGCTGTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303520 lncRNA upstream 150839 631236 ~ 631444 (+) True G267457
TU303518 lncRNA upstream 190400 591522 ~ 591883 (+) True G267455
TU303517 lncRNA upstream 191064 591015 ~ 591219 (+) True G267454
TU303503 lncRNA upstream 270151 511690 ~ 512132 (+) True G267441
TU303500 lncRNA upstream 273870 508182 ~ 508413 (+) True G267438
TU303616 lncRNA downstream 209403 992282 ~ 992724 (+) True G267550
TU303620 lncRNA downstream 213003 995882 ~ 996173 (+) True G267551
TU303626 lncRNA downstream 234971 1017850 ~ 1031776 (+) True G267557
TU303637 lncRNA downstream 259585 1042464 ~ 1042870 (+) True G267565
TU303647 lncRNA downstream 286952 1069831 ~ 1070218 (+) False G267573
CI01000065_00750437_00764088.mRNA mRNA upstream 17986 750437 ~ 764297 (+) True CI01000065_00750437_00764088
CI01000065_00633526_00695106.mRNA mRNA upstream 87177 633526 ~ 695106 (+) True CI01000065_00633526_00695106
CI01000065_00625575_00629127.mRNA mRNA upstream 152989 625575 ~ 629294 (+) True CI01000065_00625575_00629127
CI01000065_00605004_00618190.mRNA mRNA upstream 163159 604411 ~ 619124 (+) True CI01000065_00605004_00618190
CI01000065_00581819_00588773.mRNA mRNA upstream 193504 580875 ~ 588779 (+) True CI01000065_00581819_00588773
CI01000065_00800809_00808759.mRNA mRNA downstream 16997 799876 ~ 808874 (+) True CI01000065_00800809_00808759
CI01000065_00873636_00877487.mRNA mRNA downstream 90757 873636 ~ 877487 (+) True CI01000065_00873636_00877487
CI01000065_01076737_01078446.mRNA mRNA downstream 293858 1076737 ~ 1079588 (+) True CI01000065_01076737_01078446
CI01000065_01452148_01608735.mRNA mRNA downstream 669269 1452148 ~ 1608735 (+) True CI01000065_01452148_01608735
CI01000065_01867964_01868983.mRNA mRNA downstream 1084909 1867788 ~ 1869813 (+) True CI01000065_01867964_01868983
TU302970 other upstream 737617 43038 ~ 44666 (+) True G266932
TU303653 other downstream 299274 1082153 ~ 1082655 (+) True G267577
TU304676 other downstream 1456280 2239159 ~ 2239998 (+) True G268525
TU304991 other downstream 1826028 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 2676078 3458957 ~ 3462928 (+) True G269181
TU305478 other downstream 2769925 3552804 ~ 3553124 (+) False G269225

Expression Profile