RNA id: TU303958


Basic Information

Item Value
RNA id TU303958
length 461
lncRNA type read_through
GC content 0.39
exon number 2
gene id G267856
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 825383 ~ 986069 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGAGAACGACTGATCCTGGAATGTGCCTATAGATAGGTGAAACCCCGCCTCCACAGAAGAAATCAACAACTACTTCATCATTGCAACGTTAGACCCGCCCACTGGCGTGTTAGTGAGATGAGGAGGAGAGAAGAGCGATACAGGACTAAAATAACATTACCTTTCAAAGGATCCTAATGCTAGGAATATGGTTATTTATTTTCAACAATGTGAATGTCTCAGTTGAGCTTTATTTATTTGTATTCGGTACATTTCACTGTGGATTATTTGGTAAATCAATCGCATTTCGGCACAGGCTTTGCAAACAGACTTTTACGAAATGGACTCGACAGTAATGCAACAACATGTCAGTAACTGTGTTAATATAATGCCTGATCTGATATTAATGATTCATGTACAGTCAGATGTTCTTTGTCTGTGTGTCAGTAAATCAAACCAGTGACTAAACGCTCAAATTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303847 lncRNA downstream 14068 810762 ~ 811315 (-) True G267752
TU303955 lncRNA downstream 26310 798855 ~ 799073 (-) True G267853
TU303954 lncRNA downstream 27141 798026 ~ 798242 (-) True G267852
TU303952 lncRNA downstream 28416 796256 ~ 796967 (-) True G267850
TU303893 lncRNA downstream 158480 666609 ~ 666903 (-) True G267791
TU304030 lncRNA upstream 50020 1036089 ~ 1036352 (-) True G267926
TU304049 lncRNA upstream 93013 1079082 ~ 1079359 (-) True G267944
TU304051 lncRNA upstream 96929 1082998 ~ 1083361 (-) True G267946
TU304063 lncRNA upstream 199004 1185073 ~ 1185374 (-) True CI01000065_01173590_01277821
TU304104 lncRNA upstream 345001 1331070 ~ 1331343 (-) True G267997
CI01000065_00782736_00793467.mRNA mRNA downstream 31916 782736 ~ 793467 (-) False CI01000065_00782736_00793467
CI01000065_00768127_00769942.mRNA mRNA downstream 55232 767572 ~ 770151 (-) True CI01000065_00768127_00769942
CI01000065_00622545_00624625.mRNA mRNA downstream 200758 622123 ~ 624625 (-) False CI01000065_00622545_00624625
CI01000065_00563411_00579174.mRNA mRNA downstream 245300 562848 ~ 580083 (-) False CI01000065_00563411_00579174
CI01000065_00444905_00447425.mRNA mRNA downstream 377958 444680 ~ 447425 (-) True CI01000065_00444905_00447425
CI01000065_01017206_01031155.mRNA mRNA upstream 30627 1016696 ~ 1031678 (-) True CI01000065_01017206_01031155
CI01000065_01037474_01041412.mRNA mRNA upstream 51095 1037164 ~ 1041412 (-) True CI01000065_01037474_01041412
CI01000065_01103779_01119916.mRNA mRNA upstream 117475 1103544 ~ 1120757 (-) True CI01000065_01103779_01119916
CI01000065_01148241_01167007.mRNA mRNA upstream 161805 1147874 ~ 1167007 (-) True CI01000065_01148241_01167007
CI01000065_01173590_01277821.mRNA mRNA upstream 187446 1173515 ~ 1277821 (-) False CI01000065_01173590_01277821
TU303837 other downstream 41722 783538 ~ 783661 (-) True G267748
TU303828 other downstream 200726 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303796 other downstream 245356 554468 ~ 556828 (-) True G267718
TU303798 other downstream 261169 554351 ~ 556828 (-) True G267718
TU303067 other downstream 770996 54287 ~ 54387 (-) True G267025
TU305637 other upstream 2322374 3308443 ~ 3312404 (-) False G269348
TU305628 other upstream 2322719 3308788 ~ 3312404 (-) False G269348
TU305632 other upstream 2322719 3308788 ~ 3312480 (-) True G269348
TU306020 other upstream 2787811 3773880 ~ 3774294 (-) True G269679
TU305995 other upstream 2807054 3807558 ~ 3810160 (-) False G269656

Expression Profile