RNA id: TU303620


Basic Information

Item Value
RNA id TU303620
length 292
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G267551
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 995882 ~ 996173 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGAGACTATCTGTTTGTCTGACCAATAGAAAACAGTCATTATTTTTGTAATTACACAAAAATGACACACACTTCACCTTTAAAGAGGTCTATTCAGGGGTCAAGTTTAATCTGGATCAGAATGATCTGGATTTGGAAACCCCATGTTTTGCTATCCAGGATCAGGTAATCCATCTTATTTTTGTGCTGGTTTTTCAAAGCAAAATTGAATTGGATCACCCTGATCCAGATACACACTTTTTCAGATTACCAAATCTGGATTACTAGTGCTCTACGGAGCCCCTAAAGGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303616 lncRNA upstream 3158 992282 ~ 992724 (+) True G267550
TU303520 lncRNA upstream 364438 631236 ~ 631444 (+) True G267457
TU303518 lncRNA upstream 403999 591522 ~ 591883 (+) True G267455
TU303517 lncRNA upstream 404663 591015 ~ 591219 (+) True G267454
TU303503 lncRNA upstream 483750 511690 ~ 512132 (+) True G267441
TU303626 lncRNA downstream 21677 1017850 ~ 1031776 (+) True G267557
TU303637 lncRNA downstream 46291 1042464 ~ 1042870 (+) True G267565
TU303647 lncRNA downstream 73658 1069831 ~ 1070218 (+) False G267573
TU303648 lncRNA downstream 73658 1069831 ~ 1070091 (+) True G267573
TU303650 lncRNA downstream 75631 1071804 ~ 1072054 (+) True G267574
CI01000065_00873636_00877487.mRNA mRNA upstream 118395 873636 ~ 877487 (+) True CI01000065_00873636_00877487
CI01000065_00800809_00808759.mRNA mRNA upstream 187008 799876 ~ 808874 (+) True CI01000065_00800809_00808759
CI01000065_00750437_00764088.mRNA mRNA upstream 231585 750437 ~ 764297 (+) True CI01000065_00750437_00764088
CI01000065_00633526_00695106.mRNA mRNA upstream 300776 633526 ~ 695106 (+) True CI01000065_00633526_00695106
CI01000065_00625575_00629127.mRNA mRNA upstream 366588 625575 ~ 629294 (+) True CI01000065_00625575_00629127
CI01000065_01076737_01078446.mRNA mRNA downstream 80564 1076737 ~ 1079588 (+) True CI01000065_01076737_01078446
CI01000065_01452148_01608735.mRNA mRNA downstream 455975 1452148 ~ 1608735 (+) True CI01000065_01452148_01608735
CI01000065_01867964_01868983.mRNA mRNA downstream 871615 1867788 ~ 1869813 (+) True CI01000065_01867964_01868983
CI01000065_01938179_01949512.mRNA mRNA downstream 941912 1938085 ~ 1950751 (+) True CI01000065_01938179_01949512
CI01000065_02222213_02282352.mRNA mRNA downstream 1225856 2222029 ~ 2282432 (+) True CI01000065_02222213_02282352
TU303494 other upstream 213003 782283 ~ 782879 (+) True G267432
TU302970 other upstream 951216 43038 ~ 44666 (+) True G266932
TU303653 other downstream 85980 1082153 ~ 1082655 (+) True G267577
TU304676 other downstream 1242986 2239159 ~ 2239998 (+) True G268525
TU304991 other downstream 1612734 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 2462784 3458957 ~ 3462928 (+) True G269181
TU305478 other downstream 2556631 3552804 ~ 3553124 (+) False G269225

Expression Profile