RNA id: TU304139



Basic Information


Item Value
RNA id TU304139
length 4014
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G268022
representative True

Chromosome Information


Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 1372600 ~ 1423535 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTTATATATATATATATATATATATATATATATATATATATATATATATATGGAAAAACATCCATATTTAAAACCTCTGACCCGACACGACGTATTGACAAACACAGGCGTCTAAGAGGATAGAGCAAAACAAAACACCAGTCACAAATTAGAAGTGTAAAACGAGATTTTTAAAATAGAACTGTCGGAGGATTTCAATATAAGAGAAGAGGAGCTTGAGTGTGTTGTCCAGCCCTATTTGTTTGAACCTCGAGAGGCGTCTAAGCTTACGGTACTCCTACATCATGCGTAAGGTCAGAGGTCACTCTTCCACCGGAACTTGACTTGTGTACGGCCATTGCCGGAAGCCAGTGATTATAGTTTATAAAGTTTTAAATATGGATATTTTTCTTACAAAAACCCATCGCTTCACTTCAGAAGGCCTTTATTAACCCCCTGGAGCTGTATGGATTACTTTTATGATGGATGGATGTGCTTTTTTTGGGCTTCAAAATCTCGAGCACCATTTACTACCATTATAAAGCTTGGAAGAGCCAGGATATTTTTTTTAATAAATCTCCAATTGTGTTCGTCTGAAAAAAGATATTCATATACACCTAGGATGGCTTGTGGGTGAGTAAATCATGGGATAATTTTCATTTTTGGGTGAACTATCCCTTTAAATTCATTCCAAATCTGACCCCAAACTTTTAAACTGCAGTGTATCTCAATAACATCACATCACATCACAAAACAATAGTTGCACAGTTTGGCTAACCAAAGTCACTCTACAAATTTGATTACGAGTCCTGAAAATTTAAGGGAGTCAGAATGTGGTGGTCACTCTCGCTTATAACTGAACTATGAACGCAATTATATTTAGCACTTTAAAACGAGACTGATTCTGCAGCTGGGTGAGTGGATGTTTGAGCAAGCTAGTTCAGGTTTTACAGAGAGAGAAGGAGAGATTTTGTGGTTAGGTGGCACATTTGGCACATAACATTTTTCTCTGGTGGTTTCCAGCATTGTAGCTGACATTTAGCTGCTGTTTCCCTTATGAGCTAGTTTTCAGTTTCTACAATTGCTAATATGTTGAGCAAAGACTTTTATACCCTAACAAGCCTAACTTTCTCATTTGTCTTGGCTCCCATCCGTCCTTGTGATCCTTTTCTTTGGGATGAAATGGGGAACAGAGGTTGACGGCTCTGTCTGATGGAGTCCTGAGAGGACCGAAAGACTGCGTGAATGATGACAGTGAAGAGGCTGTTTAAATTTGCTAGAAGGGCCATAATAAATTAGGCACTGGCTCAGCCAGTCAATTACGGCGGTATTCTCAGCCATCCTTGGGCATGAACTTCCCTATTCAAAAGCTCCAAATAAGATTCATTCTCATCTGATCGGATCAGACCATTCTGATATCGCAGACAGTGTTAGTAGGTCAGTTTAAGTTCCCCCAAGATAATGTGTGGTCACAATGTCGATTTTGGGAGTTTGTAGTTTGAGTGCTGTTGTGGATGTTGTGGATGTCTTTAGCTCCCTTTCCCCAGGATATTTCCCAAAATAAGAATGTATGCAGAAATAATGTGTCAGTTGTGGGGTTAACAACATAAAAGATTCAGTAAGACTGAAAGTAAGGTTCTTTAAGTCTTTTTGCATAAAGCTGGACATAATGATGGGTCAATTTGAGCATAAAAGTGAAGATAGTTTGATCAATACTGTGGTGAAGAGATAATTTATCAGATGTATTAAGCTGTTGATTCTATGGACTTTTGCGTAAATGTCTAAATGTTTTGTGGAAACACATTTGTGGTTCATTGCTTGACACAGCAGTAGAAGCATTGAGATAGAAATGGATAACAGCTGATGTGTGGCTAATGCATTGGGCGTGTATTTTCCCCGCTTGAAGCAAGTGCGATTAATCCTCTACGAATGAACCAGAACATGTAGTGTGTCTGCTATTCAGCCAACCCAAGATGGCCCATGTCAAACTTTGTTTTTTCACTCACTGGCTAACAGTCTTCTACAGATTTATATTCCTCCATGTCCTCTGTGATCACTGAGTGAAGAGCACTGGTGGTCCCATCACAACCTTCAAGAAATGGCACACCTCATCCTTAAGAATTAATTTATAACAATAAGCACTTTTTATGGCTATAGACTTCTTTTTATATGGCTAAAGGTGATCTGGAAAGTCATTTGTGGGCTATTTTTGACTGAGGAGTAGCGATAGAACAGGTGGAGTTGAGAATAACAGCAAGTCAGCGGACAGCGTTGGGAGGCCATGCCAGGTCACCTGAAGCTCAAGAAGTGAATCTAATTACCTGTTACCTGCAGCTGTCAATGCTGACGCAACCATGACAGGCCATCATAAGTCCTTGGGAAAAAAAAAGACAAAAATCCTAATGAGGAGTTTGCCATGTGGAGGGTATCCTAACTCCCAACACATATCTAATGTTTGACCATCAATTCCAGCCACTGCTTCGTTTGTTTAAGGGTGAAGGGAGCGCAACAGGTGGAAGTCTGTAGTACCAAGTGGTAAGTCAGCCTTCAAGCTTAATTGTATAATTCCAGACCGAGTGTTCCGCAGCACTGATTTTACTGTGCAGACTCAACATAATTGGTGGTCTGTATAAAACAGATTTGCACTGAAAAGTACAGCCAGACTTAAAACGGAATATAAATGTTAATTTAGTTGGCAGTATCTGTTGGGAAACACCTCTGTATACTTCAAAAGACACCAAAAAACAAACAAACAAATCAAAATTATGTGATTAGAACCAGTGCTATTATTTCAAGTAGGAAACCAGCTGAAAGGTGATGACAAAGTCATGTGCAAATTTGAAGATAGACAGGAAGTGTCAAAAGGAGATGAGGCTGCTTGTAAAGACATCATTATTAGGTTTTGTTACTGGAACAGAATGGTAAAGGGGACAAACAGAGATGTAAAGCAGTAGGGTAAAAGAGTCAGAGGGAAATCAAGTCTCTACAGATGTTGTGTGGCCACCGATAACAACAGATCTAAATTGGAGTGGTGGACAGAGCGGAACTTCAGAGCTCAAGATGATGGAGCCTCTTTAAGATGATGGAGCCTCTTTTTCCGGAAAAACAGCTGGACATGACAAAAAGGCCAAAGACTTTTATCTGCAAATCTATATGACAATATCAATATATGCAATTAAATCAATGCATTAACTGCCAATTAATTTGAGAAAAAAATATTAAGTCCTAGAATACTTCTACTACTTTTTTTTTTTTTTTTTTTCCCATTTGAAAACTTTCCAAAGTGATCATATAATTAACTGCTCTGTTAAGCTTTTCTCACACATGGTTCGATTGCTTGGTTCCACCATGAGCACTAGCAGCAGCTGTTCACCACTGTCACTTGGTAATGACTCAGGAGGGCAAGGCACCAGCTGTTTTACTCAAGTTTTGTCCCTTTAGTTTTACTACAAATCTTTAACATTTGCTTCTGTGCCAAAGCTGCACGTGGGTTTGTCTGCTGTGAATGTCTATTACATATACTGTAGATACTATATATAGATGATTATAGTCCAGTCTCAAAGCTTTGTGTCCTAGCGAAAATTTTAGAAAGTCTTATTAGTGAACAGTTGACCTGTTATTTGAATGTAAACAAAGTCCTATCTAATAATCAATCAGGGTTTCGTAAAAAACAGAGTACCACAACAGCCGCTCTGAAAGTTTTAAATGATATTGTGGAACCTGTGGATAAAGGTGATTATTGCACTTACCTTTTTATTGCTTTATCAAAGGCTTTCGACACAGTGGATCATGAAATATTGCTGCATAGATTAAAGAGTGTTGGTTTATCAAATCATGTTATTTTCTGGTTTAAAAACTATTTAAGTGGAATAACTTAATGTGTACAGGCTGAAAGTAAACCATCTGGGGTGTGTTTCCCGTACAACGATGTAACTCGCTGCTTCACTACCATAGTATGATGCATCATTGAACAAATCAACTAGCTAGTCATGACTGTTTCCCAAAACTGTATTGTCGCAAACTTGTCGTTCAGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU303631 lncRNA upstream 248275 1123303 ~ 1124325 (+) True G267561
TU303650 lncRNA upstream 300546 1071804 ~ 1072054 (+) True G267574
TU303647 lncRNA upstream 302382 1069831 ~ 1070218 (+) False G267573
TU303648 lncRNA upstream 302509 1069831 ~ 1070091 (+) True G267573
TU303637 lncRNA upstream 329730 1042464 ~ 1042870 (+) True G267565
TU304205 lncRNA downstream 275184 1698719 ~ 1699953 (+) True G268083
TU304356 lncRNA downstream 352691 1776226 ~ 1779285 (+) True G268222
TU304394 lncRNA downstream 407894 1831429 ~ 1831634 (+) True G268256
TU304419 lncRNA downstream 532830 1956365 ~ 1960880 (+) False G268274
TU304417 lncRNA downstream 536760 1960295 ~ 1960880 (+) True G268274
CI01000065_01076737_01078446.mRNA mRNA upstream 293012 1076737 ~ 1079588 (+) True CI01000065_01076737_01078446
CI01000065_00873636_00877487.mRNA mRNA upstream 495113 873636 ~ 877487 (+) True CI01000065_00873636_00877487
CI01000065_00800809_00808759.mRNA mRNA upstream 563726 799876 ~ 808874 (+) True CI01000065_00800809_00808759
CI01000065_00750437_00764088.mRNA mRNA upstream 608303 750437 ~ 764297 (+) True CI01000065_00750437_00764088
CI01000065_00633526_00695106.mRNA mRNA upstream 677494 633526 ~ 695106 (+) True CI01000065_00633526_00695106
CI01000065_01452148_01608735.mRNA mRNA downstream 28613 1452148 ~ 1608735 (+) True CI01000065_01452148_01608735
CI01000065_01867964_01868983.mRNA mRNA downstream 444253 1867788 ~ 1869813 (+) True CI01000065_01867964_01868983
CI01000065_01938179_01949512.mRNA mRNA downstream 514550 1938085 ~ 1950751 (+) True CI01000065_01938179_01949512
CI01000065_02222213_02282352.mRNA mRNA downstream 798494 2222029 ~ 2282432 (+) True CI01000065_02222213_02282352
CI01000065_02442834_02444552.mRNA mRNA downstream 1018124 2441659 ~ 2445951 (+) True CI01000065_02442834_02444552
TU303653 other upstream 289945 1082153 ~ 1082655 (+) True G267577
TU303494 other upstream 589721 782283 ~ 782879 (+) True G267432
TU302970 other upstream 1327934 43038 ~ 44666 (+) True G266932
TU304676 other downstream 815624 2239159 ~ 2239998 (+) True G268525
TU304991 other downstream 1185372 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 2035422 3458957 ~ 3462928 (+) True G269181
TU305478 other downstream 2129269 3552804 ~ 3553124 (+) False G269225

Expression Profile