RNA id: TU304131



Basic Information


Item Value
RNA id TU304131
length 7187
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G268016
representative True

Chromosome Information


Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 1404794 ~ 1412241 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAATTTTATGTAAAGCATTCATAGCACACTTTTAAGTAATGCACTTATAAAACACTGTATATTTGGTTTACTTTTTCTATATTTAAAATCATTTGAAGTGTTAGTGCTAATTAGTGCATTTATATTAAGTAAGTATAAGTAAGTACCACAGTTGGGAAAATGTACTTATAACTAGTACATTAGTAATATATTTGTAAGAAAATCAATGTCATTTAAACTTAGGATTACTATGTAAAAGTCTACTAAGATTGAACTAATTTTAAAGCATTGAAAGCACACTTTTAAGAAATACACTAATAAAACCCCTCTGTATATTTTACTTTATTTCACTGCACTAAAAATCAATTTAAGTAGTAGTGGTATTTAGTATACTTTTCCAAGTGCAGTGACGTACTACTGAAGTACAAATATACTTTGAAATAGTGTATTTATAGTGTATAACTTTGACACTTTTATTTAGCACCAAAATAAAGAATGTACTACAAATGTACTTGCTTGTATTTAAGTATTTTTTTAATGCTCTCAAGTATACTTTTTTTCACCTGGGTTCTCACTGTTGGGACAGAGGAATTTTTGAGACATCCAACTTTTTATCTTAGAAATGCAGTGTTCAACAAAACCAATAGCTGCATTATCACCAGTTTTTGTATGAATATAAATTTGGGTGTCATCTGCATAAAAATGGAAATTAAGACCAAGAGATCTTAAAAGCTGACCAAGAGGAAAGATGTACATGCTAAAAAGAAGGGGACTCAGAATTGAACCCTGGGGGACACCAAATTGAACTGAACCAACTTCGGACCGACATCCACCCAAGGAAATCAGAAAAATAAGACTTAAACCAGTTTAATACAGTATCAGTAATACCAAAGGTAGATTCCAAGTGAGTAATAGACAGTGATCTACTGTGTCAAAAGCTGCAGTTAGATCAAGAAGGATCAATATTGAAGGACAGCCAGAGTCAGCAGCAATCAACAAGTCATTCGTAACTTTAACTAGAGCTGTTTCAGTGCAATGGAATTTGCGAAATCCAGATTGGAGTGGTTCAAAAAGATTGTTTGCAGTGAGATGAGTGTGCAATTGAGATGCCACAATACGCTCAAGAATTTTAGTGAGAAAAGGAAGATTAGAAATGGGATGAAAATTGTTTAGGTTGTCCAAGTCCATGTTAGCCTTTTTTGGTACAGAAGCAATTTTAAATGCAGCTGGCACAACTCCCGTACACAAGGAGTCATTTATTATACTCAAGACAACAGAGCCTAAAGAGCCAAAACAAGATTTAAGCAACTGAGTTGGTATAGGGTCAACTATGGAAGTGGCTGCTTTCATCTGGGAAACCTCCTTACCAAGAGAGGCCAGATCCAAAGAAGAAAATTTAGAAACAGTGTTACCAGAGAAGTGAGGAATAGAAAAAGAAGAAACCGAAGTGACAGCAGTAATGCATTTACGAACATTGTCAATCTTAGCACTAAAAAACTCAAGAAAGCGTTTACAAAGATGAGCTGAGGAAGGCACACTGGAGGCACCATTGCCTTTGAGCAATTTGTTAATAGATATATTAACAAATTGGGCAGCAAGCAAACATTTTGTCCTCAAAGTTGATGTGTTAGAAGCAGGAAAAATAGGCAAGCGTAAGGATTTGAGCGAGTTTGACAAGGGCCAGATTGTGATGGCTAGACGACTGGGTCAGAGCATCTCCAAAACTGCAGCTCTTGTGGGGTGTTCCCGGTCTGCAGTGCATCTATCAAAAGTGCTCCAAGGAAGGAACAGTGGTGAACTGAAGGCTGGCCCGTGTGGTCCGATCCAATATACAAGCTACTGTTGCTCAAATTGCTCAAGAAGTTAATGCTGGTTCTGATAGAAAGGTGTCAGAATACACAGTGCATCACAGTTTGTTGCGTATGGGGCTGCATAGCCGGCGAAAGCACCAACAGTGAGCACGTGAGCATCAGATTTTTTTTTTCCCCCAAAGAGATTTAGAAAAATGTTTTGTTCAAACATAATTTTGAAACATAATTTTGTTCTCAGTGTAAGTGCGACGAACATGAAGCAGCCATTCTTTTTTTTTTGCCTCTTACTCTCAGTAATGCACAGAGCTCACAGAGGCACACAGAGGCAGAAAACAGCAAAAGAAAGAGAGATTGGGAAGAATTTATTGGGCGATATGGTGAGAAAGGAAGCGCTCCTTTAAAGTGTCACTTTACTGAGGAAGGCTCAATTCACTGTCACTCTTGTAGTATCTGATCAGTGAAATGTCACTCACAGTCGCTCATACATACACACTCATGTGACTTCCAAAAGCTCTCCACATTCCCTTCTACTGTCACATGTTCTCACTGTTTGTCTATGGACTTTTATTTTGTATTCTAGTTTCCTGTTTCTTTGTAGTGATTGTCTTCCTCAGGTGGGTCGCATTACCTTGTTACCCCTTGTGTTCAGTATATATAGCCTTTGGCTGCGTCTGAAATCACATACTCTCTTGAGGAGGTACTTATTTTGAATTAGTAAACATTTGTGAATGCTTAAAAAAAGTATGTTCTATATACTTCACCATGATGTCATTATCATGTGACCTACCAGTTCCGTCGCTTCACTGCCATTCACAAATCATCTCCCGTGGCCTCATGGGATAGTAAAGTGTCCATTGTACGCACACTTCAGAATCTCGCCGGAAGTAGTAGGTCATCTGGGTACTTTTTGCCTACTGTTTAATGAGTACTGTGAATTCGGACGTACTTCTTTTGTCACATACTGTTTTTCGCCTACTGTATAGTAGGGAAGTATATGATTTCAGATGCAGCCTTTGTGTTTCTCTTGTTACTTTGTAGGTCATAGTTGCTGTGGATGGTTATTGTTTCAGTTCCCTGTGTTCCTTGGTTCCCAGTTCTGGTGTTTATTGGTTCAGTTTATGGGCAGCGGCTATTTGCACTAAGTGTGGAAGTATGCACTAAGTGCATATAGCAAATAGTGATAGATTTTATTTACACTATGTAAAAATAGCAGTATTTTCTTTGCAATAAGTGTAAATAGTAGTTATATATTATTTGCACCTCAGTATTTTAGTACATTATAAAACAGTGCAATAATAACATATCGAGTGTAAATTATTATATTTATTGTGAACCCTCATGGGGTTGTTTGTGGCAAAAGCCAATAAGTGAATGTGAAGTGGAGCTGAAGCACAGATTTGTCCTTCTTCCTGCTCATCAGGTAGAACTTCCTCTTCCGCCACACGCTTGACCAGTCGGATTCACACGGCTAACAGATCGATGCTGAATACCCAAGCATAGCTAAATGAATTTACTCTTACCCTGTTGCATCAGGGAAAAAGAGGGCAAAGTATGAACACAATGCAAACTGCTTTCTTTCAGGTCCAAGGAACACACACAAAAATACTGTCAAGGATTGTACATATGCGTCCATGTATGAACAAGCAAAATATTTTGTCTTCCTTCCTCATCCTTTTCTTCTTGTTATTACCTTTTACTCAGAAGCCCTTTCCACGTTCATTTCACTTTCTCTTTTATCTGGGCATAAGCTTGAATTTCTGTCCTCGAAAAACAGTGTAAATAAAACAAGCTTTGGAGCAGGAAGCATATGGTGGACTGTAAATCACAGTCTGTCCATTTCTTTGGTAGTGTGATCATCTCAATTTTGTATTTTTTATTTTTAAATTCATCTTCAGCTTCTTGAGGTGTTGAATTATAGGAATTCATCCAAAATGAAAAAAAAAAAAAAAAAAAAAAAGTCCTAAGCAACACAGATTTTTAAGTTTGCACAATGACCTCAAGAACGCTGACAATCAACAAATGTAAAAAGATGAGCTCTTAACATCAAAACACAACAAATAACTTACAATAATGACAAAACTAAACCAAAGTCAGCAAACAGTGACACAATGATCCTATAACAGTAACCGTGTAATTTATTCTTGCTGCAATGCATGCTGGGAACTCAAACTTTTAGCAATATTGTTTAATTTAATTTAATTTGTTTGACAAGATGGGTTTTTAACACAAAAGAAAATGTTTTGCGTTAAAGTGGCATAAACTGAAGTTTCTTCTAAAAACATCTAAAAACTGCAGGAAAAAAATTGTAAATCGTGCATGATATAAATTTGTTCCCTCAATTTACTAAATCGTGTGCTTGATATAATAATTCTTTCCCTTGTTTTACTAAATCATGAGTGAACAAGTTAGTACAATGTGGGCATGATTTAGTAAATTGAAGGAGCAAATTATTATATTGTGCGCACAATTGAGTAAATCTAGGGAAAAAAATATTGTGCAGTGCGCACGATTGGCTATTTTTTTTCCTGCATGTCATGTACAAGGCTCTGTAAAAAAAAAAAAAAAAAACATTGGGCGGGACTTCCAAGCAGTTTCCAAGGCACTATGTTTTGCACTGTATTTTTCAACATTTCTTTCTGTTTTTGAGAGATGATTTGAATTCTGTGTGCTCCAACATCCTGTTTCCTGCATTAAGGCCTATTAATTCCGAAGCAGATGTTGATGTCGGTTCCAATGGCACGGTCGGTCTATAATCATATTATTTCCACAGCCCTTCTATCATTATCTCTGGCTGCCCAAATCTGCTTTAATTGTGACCAACTTGTCTCATTCCCTCTCCCTTTCTGAGCCTGAGCCTCTTAATAATGGATGCCAGAAAACATTAAGTACTTTAGCACAGAAATTAGCACTTGACCTTTGCTTTCAAAAGAAGATAATGTCTGCTCAGCCACTGAGGAGAAAGGCTGGCCATTTCCTCCCCTGAGGTTAAGAAGAAAGCCATTACAATTCTCACCTTTGATGAGAGACAGAACTGAAGGCAAGTGAGGAGAGAGAGAGAGAGCGAGGGAAAAAAAAAGAGCAGACAAGACAACGGAACTGTCTTTCAGCTTTCTTGTTCCTTTGTTTGATCGAAATTCTCCCCCAGAGGTTCCGGTTTACATTTCCGGCACATCCGGAGATTTTTAAAGTTGTCGTCGAGCTAATACAGAACACTAATATTATGAGATATACATGGGTGACCAAAGCACAGAAAAAATTGCCTCAGAATCCCTCTGATGAAAGCATTAACATCAAAACAGATCCCTCAGGCAGCGCGCGCTGAAATAAAGTCATGAAGCGCAAGAGTTGAGGGGATATATTACAGAGGGGCCCGCTATAAGACAGATAGATTTAACAAAAAGGAGGAGAGAATGGAACTGGAGGGATCGGAATCATGATTTCCTCTTTTCAGCCGATAAGAGCTCGGAGAACGGAGAGATAAAGGCCTATTCACAGCTCCGCGTGTGAAGTAAGAGGAAATTAGGGGGAGGGGGACGTGTGAGCACAAAAAGGCGGCTTTCATCGGCCCACGAGGCTGTGGATTTCTGCAAATACACCTAATGTCTCCTTGCATGGAAAGTAGAGCGTGTGTTTTTTCATTTACAGATGACAAACGGTGACATGCAGGGATTGTGAACGAGATCCAGAGAGATGTGAGTCAGAAGGCAGGTTGAGAGCGACTCCTGCCTCCAGGCCTGCTGGGAATCAGATTTCCTTTGAAAGATGGAGAGCAAAAGAGGGCCGAATTCACTGACCTTAAAATAAGACAAATATGTATTTCCAGTGGGGGAGTGGAATAGCTTGTGTTTTGTTTCAGCGTTTTGTGAGCTGGTCATTTCTGCTGAGCTCTGTGAAAGGGGCTCGCGGAGGGAAAGATGCACCATACAGACCGGGCAGCTTTTCTGTAAACATCTGCACCTCCTCATTTGCATTCTCTCAGCTCTTGGAAATTAGCAGGATAAGGCTAATAAAGTCGTTTTATAGAAAGCAGCATATTAGGTCACCATCTGTCACCTGCACAAACCTGTCCTGAATTCAACATGAATGATGCAGCTTTGAGTCAAACACACACTAGATGACTGAAGCTTGAATAGTTTTTAACCCTGGACTGCATACAGGGGGTCAAACCGACCAACGTGATCTCATGAGAATACGTGCGTTTTTTTACGTAGTGTGGATCTACCACACGTACATTTACTTACGTTTTCATACACACAAAAATGTACAACCTTGACGTATTTATAGCACTAAAATGTAAAAATACTTGAATATTAGCAGCAATAAAATGTAAATCGTGTAACGTAAAGTGTGAATGTAGCCTGAATTCCCATGCATTAATATTAAAATCGTGGCTTTAATGATTTGATTCTGTTGTGTTCAATTGTCATATCAATACATGTTTTTAGTTGAATTTATTGAAAGCAGTTTACTCATCTACTTAATATGAAAATAACATTTCTGTTCGTGACTTGTGCTGCAAACTCGTTTCGGAGGATTATATAATGTTAAACAAGACTACACTTTGAAGCCTTAAAATGAATAAAATTTCTGTAATTGTTTAACCATTTTGTAATATTTAGTTTGTTTGCTGTGAGACACAGAAGGCGTTTTCGCCTATGCAGCGGCTGACAATACAACCATAAGATACACCAAAACACAACATAAATTCACAAATCAAATCCATTTTATTTGTTCGCTGTACTCCAAAACTTTAGAATCCATATGTTTGTAAGGAACAGATTCAAATTCAGCCCTTTATCCATCAATCTTCATTTTGATTCTCAGCAACAGCGACAGTCGTATTCAAAGCTCGCGCTCGTTATGATTCAAATTTGAAAGTAGCGCCACCCTCGAGAAGCGTTACGACATGGTTTACGGCACTGATATCGAACGCTCATTGGTTCTCACCTGCTTCGTCACAGATTGCGACATGCCGTGTTTCAGTGGATTGACATTTGAAATGAGTGCGCGCCTTCACGGAGAGAAGCCGGATTCATCATATTTTCATGGATTAATAAGTTAAATTCTGCTCTGTACCCTATAAAAAACTATTACCGCCAGAGAGGACTGTGACTGAAACTCATCATCATTTGAACTACTTTTGGTACCACTTTTGACATTTTCGCAATAAATAAATTATTGTGAATACGCTTGTTTGTTCTGTTATTATTTTATTTATAACAGTAGGTAGTTTAAAGAAATGGTTATGGGTAGGTTTAGGGGTAGGTGTAGGATTAGCAGCTCAAAATATCGTTTTAATGTTATATTTTTACTAAAATTGTCATTTTCCTACACATTTCTGTCTATTATGTTTTATTCTTTTATGGTTATGTTTAGGTTCGAATGGGGTTTANNNNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU304132 lncRNA upstream 4037 1375350 ~ 1400757 (+) True G268017
TU303631 lncRNA upstream 280469 1123303 ~ 1124325 (+) True G267561
TU303650 lncRNA upstream 332740 1071804 ~ 1072054 (+) True G267574
TU303647 lncRNA upstream 334576 1069831 ~ 1070218 (+) False G267573
TU303648 lncRNA upstream 334703 1069831 ~ 1070091 (+) True G267573
TU304205 lncRNA downstream 286478 1698719 ~ 1699953 (+) True G268083
TU304356 lncRNA downstream 363985 1776226 ~ 1779285 (+) True G268222
TU304394 lncRNA downstream 419188 1831429 ~ 1831634 (+) True G268256
TU304419 lncRNA downstream 544124 1956365 ~ 1960880 (+) False G268274
TU304417 lncRNA downstream 548054 1960295 ~ 1960880 (+) True G268274
CI01000065_01076737_01078446.mRNA mRNA upstream 325206 1076737 ~ 1079588 (+) True CI01000065_01076737_01078446
CI01000065_00873636_00877487.mRNA mRNA upstream 527307 873636 ~ 877487 (+) True CI01000065_00873636_00877487
CI01000065_00800809_00808759.mRNA mRNA upstream 595920 799876 ~ 808874 (+) True CI01000065_00800809_00808759
CI01000065_00750437_00764088.mRNA mRNA upstream 640497 750437 ~ 764297 (+) True CI01000065_00750437_00764088
CI01000065_00633526_00695106.mRNA mRNA upstream 709688 633526 ~ 695106 (+) True CI01000065_00633526_00695106
CI01000065_01452148_01608735.mRNA mRNA downstream 39907 1452148 ~ 1608735 (+) True CI01000065_01452148_01608735
CI01000065_01867964_01868983.mRNA mRNA downstream 455547 1867788 ~ 1869813 (+) True CI01000065_01867964_01868983
CI01000065_01938179_01949512.mRNA mRNA downstream 525844 1938085 ~ 1950751 (+) True CI01000065_01938179_01949512
CI01000065_02222213_02282352.mRNA mRNA downstream 809788 2222029 ~ 2282432 (+) True CI01000065_02222213_02282352
CI01000065_02442834_02444552.mRNA mRNA downstream 1029418 2441659 ~ 2445951 (+) True CI01000065_02442834_02444552
TU303653 other upstream 322139 1082153 ~ 1082655 (+) True G267577
TU303494 other upstream 621915 782283 ~ 782879 (+) True G267432
TU302970 other upstream 1360128 43038 ~ 44666 (+) True G266932
TU304676 other downstream 826918 2239159 ~ 2239998 (+) True G268525
TU304991 other downstream 1196666 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 2046716 3458957 ~ 3462928 (+) True G269181
TU305478 other downstream 2140563 3552804 ~ 3553124 (+) False G269225

Expression Profile