RNA id: TU304217


Basic Information

Item Value
RNA id TU304217
length 876
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G268095
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 1452081 ~ 1463686 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGGTATTGTTTGTAGAATTTTGAGGAAAATAATGAATTGAATCCCTTTTGGAATAAGGCTGTAACATAACAAAATGTGGGAAAAGTGAAACACTGTGAATACTTTCCGGATGCACTGTATATTAATGTTATTATTATCAGACAAATATTCCAAATGCATCTTTGTAATCCTTAGTGTGGAATGAGATAATGAAAGGACTCACCTGTTTAAGGATGCCAGCTGCCATCTCATGACCACAGTCAAAGATCACATGAAACTCTTTTCCTCGTTTCATTTCTTTAAGAAGGGGCTTGGCATCTTTTGTTTCTGCTGGTAGCTGCCGGATTTTTAATCGGATGTTGTAACGAGATGGAGCCTTGATGAGCTCCTGTAATCGAATCAGACCTGTGCTGTCATCGTAAACCACAGTGACCGTTTTCCACTTGAAGAAGTGAACCAAGTCTAAAATGGCTCTGCTGAGGGAGGAGAAGTCTGGGTAAAGGCTGACGTAGAAGGAGTCACGGTTGTCTGACACTTGGTGCTTCCACTTGGTCTGGATATGAGGCACCCCGAGAGCGTTACAGATGGACTGCACCGCGTTGGCCGAAGAACTGTGGGATGGGCCAAAGATGGCCGCCACACCCAGAGAGAGCTGGTCACAAGCTTTTCTGGAGGCCTCAAAGCTGTCGTGGATGTTTATCCTTTGGATGTCGTATGTAAGTGTGGTGTTTGGCAGTAAAGTTCTGTTCCTGTTGATTGTATTTAAAGCAAACTTAAAGGCAAGTTCTTCAGCACCTGATGGGCCACTTTCAATGGATTCAAATATCCCCCCTAAGAAAAAGAGAAAAAAAGGAGAAAAACATGGTATTATTAACTTGTTACCTTCTGGGCTCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304209 lncRNA downstream 85777 1365976 ~ 1366304 (-) True G268087
TU304104 lncRNA downstream 120738 1331070 ~ 1331343 (-) True G267997
TU304063 lncRNA downstream 266707 1185073 ~ 1185374 (-) True CI01000065_01173590_01277821
TU304051 lncRNA downstream 368720 1082998 ~ 1083361 (-) True G267946
TU304049 lncRNA downstream 372722 1079082 ~ 1079359 (-) True G267944
TU304276 lncRNA upstream 139776 1603462 ~ 1681220 (-) True G268151
TU304373 lncRNA upstream 293928 1757614 ~ 1757990 (-) True G268237
TU304390 lncRNA upstream 355769 1819455 ~ 1819714 (-) True G268252
TU304480 lncRNA upstream 405538 1869224 ~ 1869484 (-) True G268333
TU304473 lncRNA upstream 413406 1877092 ~ 1961775 (-) True G268327
CI01000065_01373412_01382125.mRNA mRNA downstream 69134 1373274 ~ 1382947 (-) True CI01000065_01373412_01382125
CI01000065_01297837_01321136.mRNA mRNA downstream 130945 1297799 ~ 1321136 (-) True CI01000065_01297837_01321136
CI01000065_01173590_01277821.mRNA mRNA downstream 174260 1173515 ~ 1277821 (-) False CI01000065_01173590_01277821
CI01000065_01148241_01167007.mRNA mRNA downstream 285074 1147874 ~ 1167007 (-) True CI01000065_01148241_01167007
CI01000065_01103779_01119916.mRNA mRNA downstream 331324 1103544 ~ 1120757 (-) True CI01000065_01103779_01119916
CI01000065_01911879_01931555.mRNA mRNA upstream 447826 1911512 ~ 1931555 (-) True CI01000065_01911879_01931555
CI01000065_01955024_01969974.mRNA mRNA upstream 489092 1952778 ~ 1970223 (-) True CI01000065_01955024_01969974
CI01000065_01982908_01987337.mRNA mRNA upstream 518717 1982403 ~ 1987488 (-) False CI01000065_01982908_01987337
CI01000065_02288372_02357728.mRNA mRNA upstream 824686 2288372 ~ 2357728 (-) False CI01000065_02288372_02357728
CI01000065_02358877_02366169.mRNA mRNA upstream 895167 2358853 ~ 2366169 (-) False CI01000065_02358877_02366169
TU303837 other downstream 668420 783538 ~ 783661 (-) True G267748
TU303828 other downstream 827424 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303796 other downstream 872054 554468 ~ 556828 (-) True G267718
TU303798 other downstream 887867 554351 ~ 556828 (-) True G267718
TU303067 other downstream 1397694 54287 ~ 54387 (-) True G267025
TU305637 other upstream 1844757 3308443 ~ 3312404 (-) False G269348
TU305628 other upstream 1845102 3308788 ~ 3312404 (-) False G269348
TU305632 other upstream 1845102 3308788 ~ 3312480 (-) True G269348
TU306020 other upstream 2310194 3773880 ~ 3774294 (-) True G269679
TU305995 other upstream 2329437 3807558 ~ 3810160 (-) False G269656

Expression Profile