RNA id: TU304205


Basic Information

Item Value
RNA id TU304205
length 224
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G268083
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 1698719 ~ 1699953 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCGCGCGGGGAGTAAAGAAGAATTGAGTTGAACGTTAGTCAAGCGGAAGAAACGTTAGTCAAAGTCTTTCTGCGTTTTATTATTTTTGGGGAAGTAAGACACCTCCTGATACCCGCGTTTTAGTTTGTAAACGTTCAGTAAATAAACCACAGCCCTTTGGGTGCTTTCAAACTGGATTCTAGTCTGTCTGTTTCTCCTGGGACAGTGCAAAACGCCACAATAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304139 lncRNA upstream 275184 1372600 ~ 1423535 (+) True G268022
TU304138 lncRNA upstream 282582 1367229 ~ 1416137 (+) True G268021
TU304131 lncRNA upstream 286478 1404794 ~ 1412241 (+) True G268016
TU304132 lncRNA upstream 297962 1375350 ~ 1400757 (+) True G268017
TU303631 lncRNA upstream 574394 1123303 ~ 1124325 (+) True G267561
TU304356 lncRNA downstream 76273 1776226 ~ 1779285 (+) True G268222
TU304394 lncRNA downstream 131476 1831429 ~ 1831634 (+) True G268256
TU304419 lncRNA downstream 256412 1956365 ~ 1960880 (+) False G268274
TU304417 lncRNA downstream 260342 1960295 ~ 1960880 (+) True G268274
TU304412 lncRNA downstream 272411 1972364 ~ 1974589 (+) True G268270
CI01000065_01452148_01608735.mRNA mRNA upstream 89984 1452148 ~ 1608735 (+) True CI01000065_01452148_01608735
CI01000065_01076737_01078446.mRNA mRNA upstream 619131 1076737 ~ 1079588 (+) True CI01000065_01076737_01078446
CI01000065_00873636_00877487.mRNA mRNA upstream 821232 873636 ~ 877487 (+) True CI01000065_00873636_00877487
CI01000065_00800809_00808759.mRNA mRNA upstream 889845 799876 ~ 808874 (+) True CI01000065_00800809_00808759
CI01000065_00750437_00764088.mRNA mRNA upstream 934422 750437 ~ 764297 (+) True CI01000065_00750437_00764088
CI01000065_01867964_01868983.mRNA mRNA downstream 167835 1867788 ~ 1869813 (+) True CI01000065_01867964_01868983
CI01000065_01938179_01949512.mRNA mRNA downstream 238132 1938085 ~ 1950751 (+) True CI01000065_01938179_01949512
CI01000065_02222213_02282352.mRNA mRNA downstream 522076 2222029 ~ 2282432 (+) True CI01000065_02222213_02282352
CI01000065_02442834_02444552.mRNA mRNA downstream 741706 2441659 ~ 2445951 (+) True CI01000065_02442834_02444552
CI01000065_02562189_02562709.mRNA mRNA downstream 862236 2562189 ~ 2562738 (+) True CI01000065_02562189_02562709
TU303653 other upstream 616064 1082153 ~ 1082655 (+) True G267577
TU303494 other upstream 915840 782283 ~ 782879 (+) True G267432
TU302970 other upstream 1654053 43038 ~ 44666 (+) True G266932
TU304676 other downstream 539206 2239159 ~ 2239998 (+) True G268525
TU304991 other downstream 908954 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 1759004 3458957 ~ 3462928 (+) True G269181
TU305478 other downstream 1852851 3552804 ~ 3553124 (+) False G269225

Expression Profile