RNA id: TU304473


Basic Information

Item Value
RNA id TU304473
length 367
lncRNA type read_through
GC content 0.38
exon number 2
gene id G268327
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 1877092 ~ 1961775 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTGATTTAAAAAATCTTTTAGTTTTCATTTTATTCAAATTTAAAATATGTCCCAACTTTTCCAGAATTCGGGTTGTAAAGTCTGAACCTCGTTGTTGGTCCATCAGTTGATTTTTTTTTTTTAATTTCCATTGTTGATTTGAACAGCAAACAACTCTTACTGCACGCACCGCAACAGGCTTTTAAAAATGGTGGTTGAAATAAAATGCTGCGTAGGGTCAACCAATCAAAATGCTGCGTGAACTCAACCAATCAGCATGTTCAGCGCCCAAGTCCCTCCCCTGAAAGTTCCTGAACTTTGAAAAAGTACTACCTCGTGAGCAGGGACTTTCTGAGGGGGAAATTTTTACCTGGAACTTCATTTAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304480 lncRNA downstream 7608 1869224 ~ 1869484 (-) True G268333
TU304390 lncRNA downstream 57378 1819455 ~ 1819714 (-) True G268252
TU304373 lncRNA downstream 119102 1757614 ~ 1757990 (-) True G268237
TU304276 lncRNA downstream 195872 1603462 ~ 1681220 (-) True G268151
TU304217 lncRNA downstream 413406 1452081 ~ 1463686 (-) True G268095
TU304503 lncRNA upstream 21519 1983294 ~ 1983733 (-) True CI01000065_01982908_01987337
TU304587 lncRNA upstream 111710 2073485 ~ 2073707 (-) True G268438
TU304610 lncRNA upstream 117268 2079043 ~ 2080030 (-) True G268460
TU304620 lncRNA upstream 126580 2088355 ~ 2088746 (-) True G268470
TU304621 lncRNA upstream 128013 2089788 ~ 2090019 (-) True G268471
CI01000065_01373412_01382125.mRNA mRNA downstream 494145 1373274 ~ 1382947 (-) True CI01000065_01373412_01382125
CI01000065_01297837_01321136.mRNA mRNA downstream 555956 1297799 ~ 1321136 (-) True CI01000065_01297837_01321136
CI01000065_01173590_01277821.mRNA mRNA downstream 599271 1173515 ~ 1277821 (-) False CI01000065_01173590_01277821
CI01000065_01148241_01167007.mRNA mRNA downstream 710085 1147874 ~ 1167007 (-) True CI01000065_01148241_01167007
CI01000065_01103779_01119916.mRNA mRNA downstream 756335 1103544 ~ 1120757 (-) True CI01000065_01103779_01119916
CI01000065_01982908_01987337.mRNA mRNA upstream 20628 1982403 ~ 1987488 (-) False CI01000065_01982908_01987337
CI01000065_02288372_02357728.mRNA mRNA upstream 326597 2288372 ~ 2357728 (-) False CI01000065_02288372_02357728
CI01000065_02358877_02366169.mRNA mRNA upstream 397078 2358853 ~ 2366169 (-) False CI01000065_02358877_02366169
CI01000065_02679973_02700843.mRNA mRNA upstream 718064 2679839 ~ 2701444 (-) True CI01000065_02679973_02700843
CI01000065_02820772_02829132.mRNA mRNA upstream 857937 2819712 ~ 2829132 (-) True CI01000065_02820772_02829132
TU303837 other downstream 1093431 783538 ~ 783661 (-) True G267748
TU303828 other downstream 1252435 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303796 other downstream 1297065 554468 ~ 556828 (-) True G267718
TU303798 other downstream 1312878 554351 ~ 556828 (-) True G267718
TU303067 other downstream 1822705 54287 ~ 54387 (-) True G267025
TU305637 other upstream 1346668 3308443 ~ 3312404 (-) False G269348
TU305628 other upstream 1347013 3308788 ~ 3312404 (-) False G269348
TU305632 other upstream 1347013 3308788 ~ 3312480 (-) True G269348
TU306020 other upstream 1812105 3773880 ~ 3774294 (-) True G269679
TU305995 other upstream 1831348 3807558 ~ 3810160 (-) False G269656

Expression Profile