RNA id: TU304509


Basic Information

Item Value
RNA id TU304509
length 231
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G268361
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 2001071 ~ 2001301 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATGGAGTAGCAGTTATAGTGCATATAAAAGGTCTACACACCTGTTAAAACAGATGCTTTTTGTGATGTAAAAAATGGAACAGCATTAAATCATATCAAATGTTGCACCTTTATTGTAAAAATTACAACCTATAATGCCACTGAAAACCAAAGTGACATTTTAGAGAGAGAGAGAGAGAGAGAGAGAAAAAAAAAACAAACAAACAAAAAAAACCTAGGAATAACTAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304446 lncRNA upstream 18336 1975511 ~ 1982735 (+) True G268301
TU304412 lncRNA upstream 26482 1972364 ~ 1974589 (+) True G268270
TU304419 lncRNA upstream 40191 1956365 ~ 1960880 (+) False G268274
TU304417 lncRNA upstream 40191 1960295 ~ 1960880 (+) True G268274
TU304394 lncRNA upstream 169437 1831429 ~ 1831634 (+) True G268256
TU304515 lncRNA downstream 5739 2007040 ~ 2007290 (+) True G268367
TU304522 lncRNA downstream 11238 2012539 ~ 2012950 (+) True G268374
TU304540 lncRNA downstream 33237 2034538 ~ 2034741 (+) True G268392
TU304544 lncRNA downstream 40656 2041957 ~ 2042232 (+) True G268396
TU304616 lncRNA downstream 86646 2087947 ~ 2088236 (+) True G268466
CI01000065_01938179_01949512.mRNA mRNA upstream 50320 1938085 ~ 1950751 (+) True CI01000065_01938179_01949512
CI01000065_01867964_01868983.mRNA mRNA upstream 131258 1867788 ~ 1869813 (+) True CI01000065_01867964_01868983
CI01000065_01452148_01608735.mRNA mRNA upstream 392336 1452148 ~ 1608735 (+) True CI01000065_01452148_01608735
CI01000065_01076737_01078446.mRNA mRNA upstream 921483 1076737 ~ 1079588 (+) True CI01000065_01076737_01078446
CI01000065_00873636_00877487.mRNA mRNA upstream 1123584 873636 ~ 877487 (+) True CI01000065_00873636_00877487
CI01000065_02222213_02282352.mRNA mRNA downstream 220728 2222029 ~ 2282432 (+) True CI01000065_02222213_02282352
CI01000065_02442834_02444552.mRNA mRNA downstream 440358 2441659 ~ 2445951 (+) True CI01000065_02442834_02444552
CI01000065_02562189_02562709.mRNA mRNA downstream 560888 2562189 ~ 2562738 (+) True CI01000065_02562189_02562709
CI01000065_02714893_02755256.mRNA mRNA downstream 712140 2713441 ~ 2755370 (+) True CI01000065_02714893_02755256
CI01000065_02770419_02775297.mRNA mRNA downstream 768748 2770049 ~ 2776165 (+) True CI01000065_02770419_02775297
TU303653 other upstream 918416 1082153 ~ 1082655 (+) True G267577
TU303494 other upstream 1218192 782283 ~ 782879 (+) True G267432
TU302970 other upstream 1956405 43038 ~ 44666 (+) True G266932
TU304676 other downstream 237858 2239159 ~ 2239998 (+) True G268525
TU304991 other downstream 607606 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 1457656 3458957 ~ 3462928 (+) True G269181
TU305478 other downstream 1551503 3552804 ~ 3553124 (+) False G269225

Expression Profile