RNA id: TU304522


Basic Information

Item Value
RNA id TU304522
length 412
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G268374
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 2012539 ~ 2012950 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATAGTTCTTCTTCAAAAACTCAACCAGTTAATCTTGCTCGGTCGTAAAAGCCCTGACAGGAGACGTGTTGTCGCCCGGAAATACAACATCTTCATTGGTCAGGTCAACCCTAAGAGGTGTGACTTTGACCAGAGGTTAAAAGCCAGTGCACAACGCCCCTCCCTCTCCCCTTCTTGCTTCTTGGACGACTGAAGAGACCCCCTTTTGCTCCAGGCCTCTTCAGGCCAAGGCCTGTGGGCCTGGAAGGCCTGTAGGCCTAGGCCTGCAACCCAGCCATGTGCTCATCTATGAAAGAGAGAAAGAACTCTTTCCCCACTAAGAGTCAAATTAACAGCTTAAGTTGTTTCATATTACTTCATCCAACGCAGAAGATACTGACTACAACTTCGGACCGAATCATCAAGGACTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304515 lncRNA upstream 5249 2007040 ~ 2007290 (+) True G268367
TU304509 lncRNA upstream 11238 2001071 ~ 2001301 (+) True G268361
TU304446 lncRNA upstream 29804 1975511 ~ 1982735 (+) True G268301
TU304412 lncRNA upstream 37950 1972364 ~ 1974589 (+) True G268270
TU304419 lncRNA upstream 51659 1956365 ~ 1960880 (+) False G268274
TU304540 lncRNA downstream 21588 2034538 ~ 2034741 (+) True G268392
TU304544 lncRNA downstream 29007 2041957 ~ 2042232 (+) True G268396
TU304616 lncRNA downstream 74997 2087947 ~ 2088236 (+) True G268466
TU304618 lncRNA downstream 76085 2089035 ~ 2089395 (+) True G268468
TU304619 lncRNA downstream 76498 2089448 ~ 2089990 (+) True G268469
CI01000065_01938179_01949512.mRNA mRNA upstream 61788 1938085 ~ 1950751 (+) True CI01000065_01938179_01949512
CI01000065_01867964_01868983.mRNA mRNA upstream 142726 1867788 ~ 1869813 (+) True CI01000065_01867964_01868983
CI01000065_01452148_01608735.mRNA mRNA upstream 403804 1452148 ~ 1608735 (+) True CI01000065_01452148_01608735
CI01000065_01076737_01078446.mRNA mRNA upstream 932951 1076737 ~ 1079588 (+) True CI01000065_01076737_01078446
CI01000065_00873636_00877487.mRNA mRNA upstream 1135052 873636 ~ 877487 (+) True CI01000065_00873636_00877487
CI01000065_02222213_02282352.mRNA mRNA downstream 209079 2222029 ~ 2282432 (+) True CI01000065_02222213_02282352
CI01000065_02442834_02444552.mRNA mRNA downstream 428709 2441659 ~ 2445951 (+) True CI01000065_02442834_02444552
CI01000065_02562189_02562709.mRNA mRNA downstream 549239 2562189 ~ 2562738 (+) True CI01000065_02562189_02562709
CI01000065_02714893_02755256.mRNA mRNA downstream 700491 2713441 ~ 2755370 (+) True CI01000065_02714893_02755256
CI01000065_02770419_02775297.mRNA mRNA downstream 757099 2770049 ~ 2776165 (+) True CI01000065_02770419_02775297
TU303653 other upstream 929884 1082153 ~ 1082655 (+) True G267577
TU303494 other upstream 1229660 782283 ~ 782879 (+) True G267432
TU302970 other upstream 1967873 43038 ~ 44666 (+) True G266932
TU304676 other downstream 226209 2239159 ~ 2239998 (+) True G268525
TU304991 other downstream 595957 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 1446007 3458957 ~ 3462928 (+) True G269181
TU305478 other downstream 1539854 3552804 ~ 3553124 (+) False G269225

Expression Profile