RNA id: TU304587


Basic Information

Item Value
RNA id TU304587
length 223
lncRNA type inter_gene
GC content 0.26
exon number 1
gene id G268438
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 2073485 ~ 2073707 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACAAAATGCATTGAGTAAATTGCAAAAGGTAAGGCTTTTTTTTTTCATAGAATGTACAGAATCTTCAATTTAAATGTATTTTTTTTCTCTCCATTTTCATATTCATCCCAGTTGTTTTAAGCATAAAACCCACTAAAGTTAGGTGAAAATTTAAATCTGATAAATAACAGAAGACAAATTATACTTTATGTTAGTTTGTCTGAAAACATGACTTAAAGACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304503 lncRNA downstream 89752 1983294 ~ 1983733 (-) True CI01000065_01982908_01987337
TU304473 lncRNA downstream 111710 1877092 ~ 1961775 (-) True G268327
TU304480 lncRNA downstream 204001 1869224 ~ 1869484 (-) True G268333
TU304390 lncRNA downstream 253771 1819455 ~ 1819714 (-) True G268252
TU304373 lncRNA downstream 315495 1757614 ~ 1757990 (-) True G268237
TU304610 lncRNA upstream 5336 2079043 ~ 2080030 (-) True G268460
TU304620 lncRNA upstream 14648 2088355 ~ 2088746 (-) True G268470
TU304621 lncRNA upstream 16081 2089788 ~ 2090019 (-) True G268471
TU304855 lncRNA upstream 153734 2227441 ~ 2227694 (-) True G268680
TU304859 lncRNA upstream 161346 2235053 ~ 2235271 (-) True G268684
CI01000065_01982908_01987337.mRNA mRNA downstream 85997 1982403 ~ 1987488 (-) False CI01000065_01982908_01987337
CI01000065_01955024_01969974.mRNA mRNA downstream 103262 1952778 ~ 1970223 (-) True CI01000065_01955024_01969974
CI01000065_01911879_01931555.mRNA mRNA downstream 141930 1911512 ~ 1931555 (-) True CI01000065_01911879_01931555
CI01000065_01373412_01382125.mRNA mRNA downstream 690538 1373274 ~ 1382947 (-) True CI01000065_01373412_01382125
CI01000065_01297837_01321136.mRNA mRNA downstream 752349 1297799 ~ 1321136 (-) True CI01000065_01297837_01321136
CI01000065_02288372_02357728.mRNA mRNA upstream 214665 2288372 ~ 2357728 (-) False CI01000065_02288372_02357728
CI01000065_02358877_02366169.mRNA mRNA upstream 285146 2358853 ~ 2366169 (-) False CI01000065_02358877_02366169
CI01000065_02679973_02700843.mRNA mRNA upstream 606132 2679839 ~ 2701444 (-) True CI01000065_02679973_02700843
CI01000065_02820772_02829132.mRNA mRNA upstream 746005 2819712 ~ 2829132 (-) True CI01000065_02820772_02829132
CI01000065_02940142_02940429.mRNA mRNA upstream 866347 2940054 ~ 2940813 (-) True CI01000065_02940142_02940429
TU303837 other downstream 1289824 783538 ~ 783661 (-) True G267748
TU303828 other downstream 1448828 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303796 other downstream 1493458 554468 ~ 556828 (-) True G267718
TU303798 other downstream 1509271 554351 ~ 556828 (-) True G267718
TU303067 other downstream 2019098 54287 ~ 54387 (-) True G267025
TU305637 other upstream 1234736 3308443 ~ 3312404 (-) False G269348
TU305628 other upstream 1235081 3308788 ~ 3312404 (-) False G269348
TU305632 other upstream 1235081 3308788 ~ 3312480 (-) True G269348
TU306020 other upstream 1700173 3773880 ~ 3774294 (-) True G269679
TU305995 other upstream 1719416 3807558 ~ 3810160 (-) False G269656

Expression Profile