RNA id: TU304610


Basic Information

Item Value
RNA id TU304610
length 224
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G268460
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 2079043 ~ 2080030 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCGGAGGGGAAGACCAACTTTGCGAGTCTCGCTTTTCTCAACGAAACGGCCAGGATTCACAAGTGGATCTCCTCCTTGAGGCAGGCCCACATGAAGGAGATGACGGTTAAGCACTATGCACAAAACATAGCGCAGTTTGTTGACTACCTGGCTGAGACTCCTCCCTTTCATGAGGTGACAAGTTGGGTCCTCATCGGGCTTCGGTGGGTGATGAGGCAGGTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304587 lncRNA downstream 5336 2073485 ~ 2073707 (-) True G268438
TU304503 lncRNA downstream 95310 1983294 ~ 1983733 (-) True CI01000065_01982908_01987337
TU304473 lncRNA downstream 117268 1877092 ~ 1961775 (-) True G268327
TU304480 lncRNA downstream 209559 1869224 ~ 1869484 (-) True G268333
TU304390 lncRNA downstream 259329 1819455 ~ 1819714 (-) True G268252
TU304620 lncRNA upstream 8325 2088355 ~ 2088746 (-) True G268470
TU304621 lncRNA upstream 9758 2089788 ~ 2090019 (-) True G268471
TU304855 lncRNA upstream 147411 2227441 ~ 2227694 (-) True G268680
TU304859 lncRNA upstream 155023 2235053 ~ 2235271 (-) True G268684
TU304854 lncRNA upstream 159110 2239140 ~ 2239984 (-) True G268679
CI01000065_01982908_01987337.mRNA mRNA downstream 91555 1982403 ~ 1987488 (-) False CI01000065_01982908_01987337
CI01000065_01955024_01969974.mRNA mRNA downstream 108820 1952778 ~ 1970223 (-) True CI01000065_01955024_01969974
CI01000065_01911879_01931555.mRNA mRNA downstream 147488 1911512 ~ 1931555 (-) True CI01000065_01911879_01931555
CI01000065_01373412_01382125.mRNA mRNA downstream 696096 1373274 ~ 1382947 (-) True CI01000065_01373412_01382125
CI01000065_01297837_01321136.mRNA mRNA downstream 757907 1297799 ~ 1321136 (-) True CI01000065_01297837_01321136
CI01000065_02288372_02357728.mRNA mRNA upstream 208342 2288372 ~ 2357728 (-) False CI01000065_02288372_02357728
CI01000065_02358877_02366169.mRNA mRNA upstream 278823 2358853 ~ 2366169 (-) False CI01000065_02358877_02366169
CI01000065_02679973_02700843.mRNA mRNA upstream 599809 2679839 ~ 2701444 (-) True CI01000065_02679973_02700843
CI01000065_02820772_02829132.mRNA mRNA upstream 739682 2819712 ~ 2829132 (-) True CI01000065_02820772_02829132
CI01000065_02940142_02940429.mRNA mRNA upstream 860024 2940054 ~ 2940813 (-) True CI01000065_02940142_02940429
TU303837 other downstream 1295382 783538 ~ 783661 (-) True G267748
TU303828 other downstream 1454386 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303796 other downstream 1499016 554468 ~ 556828 (-) True G267718
TU303798 other downstream 1514829 554351 ~ 556828 (-) True G267718
TU303067 other downstream 2024656 54287 ~ 54387 (-) True G267025
TU305637 other upstream 1228413 3308443 ~ 3312404 (-) False G269348
TU305628 other upstream 1228758 3308788 ~ 3312404 (-) False G269348
TU305632 other upstream 1228758 3308788 ~ 3312480 (-) True G269348
TU306020 other upstream 1693850 3773880 ~ 3774294 (-) True G269679
TU305995 other upstream 1713093 3807558 ~ 3810160 (-) False G269656

Expression Profile