RNA id: TU304621


Basic Information

Item Value
RNA id TU304621
length 232
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G268471
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 2089788 ~ 2090019 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATGAGCAGGGGGAGAGAGAACGAGTCAGGCGAAGCAGCTGCACCGAGTGGTCTCCAGAAACTCTCCGCATTGAGTGACAGATTTAGAGAAAAGTGACCTAAATATAACGAAAGGATTGGATTTCTGAGTGGATGCGATAACTTTGAGAAGCTGTCACCAGAGTGAGAAGAGGGCGAGGCAGAAAATTAGAAATAAAGGCCGATGCAGACCCATAGAGCATCAAAGCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304620 lncRNA downstream 1042 2088355 ~ 2088746 (-) True G268470
TU304610 lncRNA downstream 9758 2079043 ~ 2080030 (-) True G268460
TU304587 lncRNA downstream 16081 2073485 ~ 2073707 (-) True G268438
TU304503 lncRNA downstream 106055 1983294 ~ 1983733 (-) True CI01000065_01982908_01987337
TU304473 lncRNA downstream 128013 1877092 ~ 1961775 (-) True G268327
TU304855 lncRNA upstream 137422 2227441 ~ 2227694 (-) True G268680
TU304859 lncRNA upstream 145034 2235053 ~ 2235271 (-) True G268684
TU304854 lncRNA upstream 149121 2239140 ~ 2239984 (-) True G268679
TU304868 lncRNA upstream 151111 2241130 ~ 2243425 (-) True G268687
TU304882 lncRNA upstream 170473 2260492 ~ 2260808 (-) True G268701
CI01000065_01982908_01987337.mRNA mRNA downstream 102300 1982403 ~ 1987488 (-) False CI01000065_01982908_01987337
CI01000065_01955024_01969974.mRNA mRNA downstream 119565 1952778 ~ 1970223 (-) True CI01000065_01955024_01969974
CI01000065_01911879_01931555.mRNA mRNA downstream 158233 1911512 ~ 1931555 (-) True CI01000065_01911879_01931555
CI01000065_01373412_01382125.mRNA mRNA downstream 706841 1373274 ~ 1382947 (-) True CI01000065_01373412_01382125
CI01000065_01297837_01321136.mRNA mRNA downstream 768652 1297799 ~ 1321136 (-) True CI01000065_01297837_01321136
CI01000065_02288372_02357728.mRNA mRNA upstream 198353 2288372 ~ 2357728 (-) False CI01000065_02288372_02357728
CI01000065_02358877_02366169.mRNA mRNA upstream 268834 2358853 ~ 2366169 (-) False CI01000065_02358877_02366169
CI01000065_02679973_02700843.mRNA mRNA upstream 589820 2679839 ~ 2701444 (-) True CI01000065_02679973_02700843
CI01000065_02820772_02829132.mRNA mRNA upstream 729693 2819712 ~ 2829132 (-) True CI01000065_02820772_02829132
CI01000065_02940142_02940429.mRNA mRNA upstream 850035 2940054 ~ 2940813 (-) True CI01000065_02940142_02940429
TU303837 other downstream 1306127 783538 ~ 783661 (-) True G267748
TU303828 other downstream 1465131 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303796 other downstream 1509761 554468 ~ 556828 (-) True G267718
TU303798 other downstream 1525574 554351 ~ 556828 (-) True G267718
TU303067 other downstream 2035401 54287 ~ 54387 (-) True G267025
TU305637 other upstream 1218424 3308443 ~ 3312404 (-) False G269348
TU305628 other upstream 1218769 3308788 ~ 3312404 (-) False G269348
TU305632 other upstream 1218769 3308788 ~ 3312480 (-) True G269348
TU306020 other upstream 1683861 3773880 ~ 3774294 (-) True G269679
TU305995 other upstream 1703104 3807558 ~ 3810160 (-) False G269656

Expression Profile