RNA id: TU304676



Basic Information


Item Value
RNA id TU304676
length 780
RNA type TUCP
GC content 0.48
exon number 2
gene id G268525
representative True

Chromosome Information


Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 2239159 ~ 2239998 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TAGCTATGTTACGGAGCCAGTTCCCAGTCCTAGTTGGAGTTCAGTTCTAGTCTTGTTTTTTGATTGCCTGTTTCCTGATTATCTGCCTGTCTTGGACTTCTCTCTCGCTTTGCCATTTGGATTCTGTTTGCATCTCTCTTGGACTATAGCCTGTTTTCCCTGGATTATTCTTTAGCCTAGCCCTCCTGGATATTGTTTGCCACTGATCGGCCACGCTTGTCCCTGGAATACTCTTTGTCTCACCTGCTCTATACCTGTTTGCTGTTGCCACTTAAATTACGACTAATTTGTGAGGGACCCCGTTCATCCCTAAGTAATTTTTTTTTTTGATTTTACGTTATTGTCTGTCGGCTCCGCATTCACTGTGTAAGGGAGGTGAATGCATGTTATTGCTGTCCTTCCTGAGACTTACCATATCGCGGCTGATGCATTAAAGTCCATTCACGCCACAGTTGCCATATGTGAGCCTGTGTATGTTTCATCTGGTCTGCCAGAGCTACGCCATGTCTCGTCTGACTCCCCAGAGCCCTGTCACGTCTCAGCAGATCTTCCAGATCCCTGTCACATCTCAGCAGTCACGTCTCAGCAGATCTTCCAGAGCCCTGTCACGTCTCAGCAGATCTTCCAGAGCCCTGTCACGTCTCAGCAGATCTTCCAGAGTCACGTCACATCTCAGCTGATCTTCCAGAGTCACGCCACGTCTCAGCTGATCTTCCAGAGTCACGTCTCGTCTCAGCTGATCATCCAGAATTGCGCCACGTCACAACTCATCATCCNNNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU304653 lncRNA upstream 88211 2150748 ~ 2150948 (+) True G268502
TU304622 lncRNA upstream 148049 2090845 ~ 2091110 (+) True G268472
TU304619 lncRNA upstream 149169 2089448 ~ 2089990 (+) True G268469
TU304618 lncRNA upstream 149764 2089035 ~ 2089395 (+) True G268468
TU304616 lncRNA upstream 150923 2087947 ~ 2088236 (+) True G268466
TU304733 lncRNA downstream 157199 2397197 ~ 2397707 (+) True G268576
TU304760 lncRNA downstream 224785 2464783 ~ 2530305 (+) False G268603
TU304761 lncRNA downstream 224785 2464783 ~ 2530305 (+) True G268603
TU304795 lncRNA downstream 297146 2537144 ~ 2537375 (+) True G268635
TU304798 lncRNA downstream 298992 2538990 ~ 2539204 (+) True G268638
CI01000065_01938179_01949512.mRNA mRNA upstream 288408 1938085 ~ 1950751 (+) True CI01000065_01938179_01949512
CI01000065_01867964_01868983.mRNA mRNA upstream 369346 1867788 ~ 1869813 (+) True CI01000065_01867964_01868983
CI01000065_01452148_01608735.mRNA mRNA upstream 630424 1452148 ~ 1608735 (+) True CI01000065_01452148_01608735
CI01000065_01076737_01078446.mRNA mRNA upstream 1159571 1076737 ~ 1079588 (+) True CI01000065_01076737_01078446
CI01000065_00873636_00877487.mRNA mRNA upstream 1361672 873636 ~ 877487 (+) True CI01000065_00873636_00877487
CI01000065_02442834_02444552.mRNA mRNA downstream 201661 2441659 ~ 2445951 (+) True CI01000065_02442834_02444552
CI01000065_02562189_02562709.mRNA mRNA downstream 322191 2562189 ~ 2562738 (+) True CI01000065_02562189_02562709
CI01000065_02714893_02755256.mRNA mRNA downstream 473443 2713441 ~ 2755370 (+) True CI01000065_02714893_02755256
CI01000065_02770419_02775297.mRNA mRNA downstream 530051 2770049 ~ 2776165 (+) True CI01000065_02770419_02775297
CI01000065_02783579_02788578.mRNA mRNA downstream 543317 2783315 ~ 2788866 (+) True CI01000065_02783579_02788578
TU303653 other upstream 1156504 1082153 ~ 1082655 (+) True G267577
TU303494 other upstream 1456280 782283 ~ 782879 (+) True G267432
TU302970 other upstream 2194493 43038 ~ 44666 (+) True G266932
TU304991 other downstream 368909 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 1218959 3458957 ~ 3462928 (+) True G269181
TU305478 other downstream 1312806 3552804 ~ 3553124 (+) False G269225

Expression Profile