RNA id: TU304936


Basic Information

Item Value
RNA id TU304936
length 217
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G268751
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 2538108 ~ 2538324 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCAACTATTCTTTCGAGTAATTAATCTACATTCCAATTACAAAAAAAGTACATCAACGAAAATTATTTGTGGCTTTGTGTGTCCAATTCCATTGGCAATGACTCAAATATCTGTTTTCCATTTATGCATCAAGAAATATAGATCAAACAGCAGTAGATGTGAGAGAAAACAAGGCTTTTCATCCGCTCTCCAGGATTGCTGGTGGGTTTCTCCCGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304821 lncRNA downstream 93227 2444393 ~ 2444881 (-) True G268655
TU304818 lncRNA downstream 93335 2444393 ~ 2444773 (-) False G268655
TU304826 lncRNA downstream 93335 2421409 ~ 2444773 (-) False G268655
TU304832 lncRNA downstream 117175 2399327 ~ 2420933 (-) True G268657
TU304816 lncRNA downstream 176562 2360922 ~ 2361546 (-) True CI01000065_02358877_02366169
TU304944 lncRNA upstream 7782 2546106 ~ 2546464 (-) True G268759
TU304976 lncRNA upstream 54209 2592533 ~ 2592919 (-) True G268790
TU304981 lncRNA upstream 60267 2598591 ~ 2598992 (-) True G268795
TU305023 lncRNA upstream 137781 2676105 ~ 2676427 (-) True G268836
TU305049 lncRNA upstream 165688 2704012 ~ 2704359 (-) True G268860
CI01000065_02358877_02366169.mRNA mRNA downstream 171939 2358853 ~ 2366169 (-) False CI01000065_02358877_02366169
CI01000065_02288372_02357728.mRNA mRNA downstream 180380 2288372 ~ 2357728 (-) False CI01000065_02288372_02357728
CI01000065_01982908_01987337.mRNA mRNA downstream 550620 1982403 ~ 1987488 (-) False CI01000065_01982908_01987337
CI01000065_01955024_01969974.mRNA mRNA downstream 567885 1952778 ~ 1970223 (-) True CI01000065_01955024_01969974
CI01000065_01911879_01931555.mRNA mRNA downstream 606553 1911512 ~ 1931555 (-) True CI01000065_01911879_01931555
CI01000065_02679973_02700843.mRNA mRNA upstream 141515 2679839 ~ 2701444 (-) True CI01000065_02679973_02700843
CI01000065_02820772_02829132.mRNA mRNA upstream 281388 2819712 ~ 2829132 (-) True CI01000065_02820772_02829132
CI01000065_02940142_02940429.mRNA mRNA upstream 401730 2940054 ~ 2940813 (-) True CI01000065_02940142_02940429
CI01000065_02979795_02989709.mRNA mRNA upstream 439519 2977843 ~ 2989763 (-) False CI01000065_02979795_02989709
CI01000065_02992054_02993108.mRNA mRNA upstream 453491 2991815 ~ 2993167 (-) True CI01000065_02992054_02993108
TU303837 other downstream 1754447 783538 ~ 783661 (-) True G267748
TU303828 other downstream 1913451 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303796 other downstream 1958081 554468 ~ 556828 (-) True G267718
TU303798 other downstream 1973894 554351 ~ 556828 (-) True G267718
TU303067 other downstream 2483721 54287 ~ 54387 (-) True G267025
TU305637 other upstream 770119 3308443 ~ 3312404 (-) False G269348
TU305628 other upstream 770464 3308788 ~ 3312404 (-) False G269348
TU305632 other upstream 770464 3308788 ~ 3312480 (-) True G269348
TU306020 other upstream 1235556 3773880 ~ 3774294 (-) True G269679
TU305995 other upstream 1254799 3807558 ~ 3810160 (-) False G269656

Expression Profile