RNA id: TU304807


Basic Information

Item Value
RNA id TU304807
length 227
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G268647
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 2563411 ~ 2563637 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTAGCAGAAATTAAAGACTGGCTTTCAGCTAACTTTCTAAAACTTAATAGCAATAAAACCGAGGTCCTACTTGTAGGCACAAGATCTGCTCTGACAAAATCTGACCGTTTTTCTGTGGATATCGATCAACATCCCATTTATCCTTCTTCACAGGTTAAGAGTTTGGGTGTTATTCTAGATAGCACACTTTCATTTGAAGCCCATATTAATAATATTACACATACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304801 lncRNA upstream 17743 2545397 ~ 2545668 (+) True G268641
TU304798 lncRNA upstream 24207 2538990 ~ 2539204 (+) True G268638
TU304795 lncRNA upstream 26036 2537144 ~ 2537375 (+) True G268635
TU304760 lncRNA upstream 33106 2464783 ~ 2530305 (+) False G268603
TU304761 lncRNA upstream 33106 2464783 ~ 2530305 (+) True G268603
TU304972 lncRNA downstream 23790 2587427 ~ 2587726 (+) True G268786
TU304973 lncRNA downstream 24386 2588023 ~ 2588312 (+) True G268787
TU304975 lncRNA downstream 28896 2592533 ~ 2592911 (+) True G268789
TU304982 lncRNA downstream 36132 2599769 ~ 2599992 (+) True G268796
TU305048 lncRNA downstream 139763 2703400 ~ 2703611 (+) True G268859
CI01000065_02562189_02562709.mRNA mRNA upstream 673 2562189 ~ 2562738 (+) True CI01000065_02562189_02562709
CI01000065_02442834_02444552.mRNA mRNA upstream 117460 2441659 ~ 2445951 (+) True CI01000065_02442834_02444552
CI01000065_02222213_02282352.mRNA mRNA upstream 280979 2222029 ~ 2282432 (+) True CI01000065_02222213_02282352
CI01000065_01938179_01949512.mRNA mRNA upstream 612660 1938085 ~ 1950751 (+) True CI01000065_01938179_01949512
CI01000065_01867964_01868983.mRNA mRNA upstream 693598 1867788 ~ 1869813 (+) True CI01000065_01867964_01868983
CI01000065_02714893_02755256.mRNA mRNA downstream 149804 2713441 ~ 2755370 (+) True CI01000065_02714893_02755256
CI01000065_02770419_02775297.mRNA mRNA downstream 206412 2770049 ~ 2776165 (+) True CI01000065_02770419_02775297
CI01000065_02783579_02788578.mRNA mRNA downstream 219678 2783315 ~ 2788866 (+) True CI01000065_02783579_02788578
CI01000065_02806198_02813320.mRNA mRNA downstream 242561 2806198 ~ 2813722 (+) True CI01000065_02806198_02813320
CI01000065_02856492_02888060.mRNA mRNA downstream 292855 2856492 ~ 2888455 (+) True CI01000065_02856492_02888060
TU304676 other upstream 323413 2239159 ~ 2239998 (+) True G268525
TU303653 other upstream 1480756 1082153 ~ 1082655 (+) True G267577
TU303494 other upstream 1780532 782283 ~ 782879 (+) True G267432
TU302970 other upstream 2518745 43038 ~ 44666 (+) True G266932
TU304991 other downstream 45270 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 895320 3458957 ~ 3462928 (+) True G269181
TU305478 other downstream 989167 3552804 ~ 3553124 (+) False G269225

Expression Profile