RNA id: TU304973


Basic Information

Item Value
RNA id TU304973
length 290
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G268787
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 2588023 ~ 2588312 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATTCAACACAAGAGTGATTTTCTTCACACACAGTATGTATGAGTTGCAGTATGAACACGTCTTTCTGCACCCTTTTGATTGACAGGATATAATCGGCCCTGACCATCGGCAGTTTTTAAACAATCGGCCGATGGCCGATAGTGATAATAATAGCTTTTATTGGCCAATACCGATTGTTAGCCGATACATCGGTGCATCTCTGATGTTAATGCCTGTTTGTTATTTGAAATTGTTTAATAACGTAAAAAAAAAAAAAAAACTGATTCAATGATCGGGTCAAAATGAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304972 lncRNA upstream 297 2587427 ~ 2587726 (+) True G268786
TU304807 lncRNA upstream 24386 2563411 ~ 2563637 (+) True G268647
TU304801 lncRNA upstream 42355 2545397 ~ 2545668 (+) True G268641
TU304798 lncRNA upstream 48819 2538990 ~ 2539204 (+) True G268638
TU304795 lncRNA upstream 50648 2537144 ~ 2537375 (+) True G268635
TU304975 lncRNA downstream 4221 2592533 ~ 2592911 (+) True G268789
TU304982 lncRNA downstream 11457 2599769 ~ 2599992 (+) True G268796
TU305048 lncRNA downstream 115088 2703400 ~ 2703611 (+) True G268859
TU305127 lncRNA downstream 213332 2801644 ~ 2801857 (+) True G268930
TU305183 lncRNA downstream 350876 2939188 ~ 2940607 (+) True G268965
CI01000065_02562189_02562709.mRNA mRNA upstream 25285 2562189 ~ 2562738 (+) True CI01000065_02562189_02562709
CI01000065_02442834_02444552.mRNA mRNA upstream 142072 2441659 ~ 2445951 (+) True CI01000065_02442834_02444552
CI01000065_02222213_02282352.mRNA mRNA upstream 305591 2222029 ~ 2282432 (+) True CI01000065_02222213_02282352
CI01000065_01938179_01949512.mRNA mRNA upstream 637272 1938085 ~ 1950751 (+) True CI01000065_01938179_01949512
CI01000065_01867964_01868983.mRNA mRNA upstream 718210 1867788 ~ 1869813 (+) True CI01000065_01867964_01868983
CI01000065_02714893_02755256.mRNA mRNA downstream 125129 2713441 ~ 2755370 (+) True CI01000065_02714893_02755256
CI01000065_02770419_02775297.mRNA mRNA downstream 181737 2770049 ~ 2776165 (+) True CI01000065_02770419_02775297
CI01000065_02783579_02788578.mRNA mRNA downstream 195003 2783315 ~ 2788866 (+) True CI01000065_02783579_02788578
CI01000065_02806198_02813320.mRNA mRNA downstream 217886 2806198 ~ 2813722 (+) True CI01000065_02806198_02813320
CI01000065_02856492_02888060.mRNA mRNA downstream 268180 2856492 ~ 2888455 (+) True CI01000065_02856492_02888060
TU304676 other upstream 348025 2239159 ~ 2239998 (+) True G268525
TU303653 other upstream 1505368 1082153 ~ 1082655 (+) True G267577
TU303494 other upstream 1805144 782283 ~ 782879 (+) True G267432
TU302970 other upstream 2543357 43038 ~ 44666 (+) True G266932
TU304991 other downstream 20595 2608907 ~ 2638205 (+) True G268805
TU305428 other downstream 870645 3458957 ~ 3462928 (+) True G269181
TU305478 other downstream 964492 3552804 ~ 3553124 (+) False G269225

Expression Profile