RNA id: TU305048


Basic Information

Item Value
RNA id TU305048
length 212
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G268859
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 2703400 ~ 2703611 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTTGTACCTAGGATAGCTAAGTCCTCTAAAGGAGGGAGAGCGTTTTCACATTTGGCTCCTAAACTCTGGAATAGCCTTCCTGATAATGTTCGGGGCTCAGACTCGCTCACCCAGTTTAAATCTAGATTAAAGACACATCTCTTTAGCCAAGCATTCACATAATCCATCTCATATCAGATCAAGAGTACATCAGTTTCAGTTTGGATCCAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304982 lncRNA upstream 103408 2599769 ~ 2599992 (+) True G268796
TU304975 lncRNA upstream 110489 2592533 ~ 2592911 (+) True G268789
TU304973 lncRNA upstream 115088 2588023 ~ 2588312 (+) True G268787
TU304972 lncRNA upstream 115674 2587427 ~ 2587726 (+) True G268786
TU304807 lncRNA upstream 139763 2563411 ~ 2563637 (+) True G268647
TU305127 lncRNA downstream 98033 2801644 ~ 2801857 (+) True G268930
TU305183 lncRNA downstream 235577 2939188 ~ 2940607 (+) True G268965
TU305193 lncRNA downstream 245591 2949202 ~ 2950412 (+) True G268974
TU305215 lncRNA downstream 293925 2997536 ~ 2999784 (+) True G268996
TU305216 lncRNA downstream 296732 3000343 ~ 3001750 (+) True G268997
CI01000065_02562189_02562709.mRNA mRNA upstream 140662 2562189 ~ 2562738 (+) True CI01000065_02562189_02562709
CI01000065_02442834_02444552.mRNA mRNA upstream 257449 2441659 ~ 2445951 (+) True CI01000065_02442834_02444552
CI01000065_02222213_02282352.mRNA mRNA upstream 420968 2222029 ~ 2282432 (+) True CI01000065_02222213_02282352
CI01000065_01938179_01949512.mRNA mRNA upstream 752649 1938085 ~ 1950751 (+) True CI01000065_01938179_01949512
CI01000065_01867964_01868983.mRNA mRNA upstream 833587 1867788 ~ 1869813 (+) True CI01000065_01867964_01868983
CI01000065_02714893_02755256.mRNA mRNA downstream 9830 2713441 ~ 2755370 (+) True CI01000065_02714893_02755256
CI01000065_02770419_02775297.mRNA mRNA downstream 66438 2770049 ~ 2776165 (+) True CI01000065_02770419_02775297
CI01000065_02783579_02788578.mRNA mRNA downstream 79704 2783315 ~ 2788866 (+) True CI01000065_02783579_02788578
CI01000065_02806198_02813320.mRNA mRNA downstream 102587 2806198 ~ 2813722 (+) True CI01000065_02806198_02813320
CI01000065_02856492_02888060.mRNA mRNA downstream 152881 2856492 ~ 2888455 (+) True CI01000065_02856492_02888060
TU304991 other upstream 65195 2608907 ~ 2638205 (+) True G268805
TU304676 other upstream 463402 2239159 ~ 2239998 (+) True G268525
TU303653 other upstream 1620745 1082153 ~ 1082655 (+) True G267577
TU303494 other upstream 1920521 782283 ~ 782879 (+) True G267432
TU302970 other upstream 2658734 43038 ~ 44666 (+) True G266932
TU305428 other downstream 755346 3458957 ~ 3462928 (+) True G269181
TU305478 other downstream 849193 3552804 ~ 3553124 (+) False G269225

Expression Profile