RNA id: TU305516


Basic Information

Item Value
RNA id TU305516
length 1373
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G269253
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 2932150 ~ 2933546 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGAGGATTGTTTATTGCACCAAAAGTCATTTGAAAAGAATCGGTTTATACAGACAAATTACATAGGAAATTAGTGCAACGTGCCAATAAAAATAATTTAGAACTAGAAAATCTGGGTTCACGGAGTAGTGTAGAAGATTCAGTCTGCATTTTTGCTCGATATGGCATTCGTTTTGGACTCCAAATCATTTCCACAAGAGAAAGTTTGTTACCAATGCTGTTATAGAAATGCATTAACAGAGTATGATAGAGTGAGTGAGAGACACGTTGACAAGCAGGCAAAAAAAGTTGCTGGTCATTTCTTGGGAGAAAAAAAAAAAGGGTGCTAAAGAGTTACTAATCTAACGCCAGTCGTGTGCACAAGGTTTCCGATCTAGCCAAGGATGTTGAAATTTTCATGCAAGTATGAGAACAGACATGGTTTTTAAACATCCATAGCATAGCGATTTATTTCTCACATAATAGCAAGTTTTGCACCACTTCCCTTAAATGCACACACACAGATAACACAAACAAACACCCAGTCATGATCCCTAGACGACTGATCCATGTCAACGGGTCTCAGAGGAACACGGCTTAACCCCGTTTACAACAGGCAAGATATTTAGGGAACTAAAATGTCCATGAATTCATAGGCATTACAAAAACGAACTGTATGAAATAAAACGGAACAATGTTTTAATTTCAAACACTAAATGTGTGGGACTACTGCAAAAGATGGCGATGAGATGATTGACTTTGCTTTGGTCCACAATGCAAAACGGTACAATAATAAATAAAAGTTCTTCATGTCAGATTCAGGTTGTATTCGTTTTTACAAAAACAACTGAAGCTCTGCCAGAGAGCAACTGATGCCTCGCAACCAGGCACAATCATTTGAGTTTAAAACTGCAATAAATAAAATCCAATTAACTAAAAGAACTAAACTATTACTGTACTTTAACAGCAGTCAACTCAATCATATTTTACAGTATTCATTCTAATATTCCCGACACCGTGTAATCCCTACAGGAGTGAGGTCACGGTCAACTGGAGAACAACTCCACTGTGTAAAATGACCCAACACACTATTCAGGAACCAAACATGTGACTCTGAGTGAGAAGAATAACGTGTCTGTGGATACACAAGCCTAAGAGGATGATTTTAAAAGGCACATTCGTATCAGAAGCACCAAACCCAAAACTCTCTGAAGAGGAAAGCTGAACAAATAAGACCCTCAAGACCCACTACTGAGAAGCCCTTCCCTTTATGGGCAGCGTCTCATCTGTTGGTCTCTGTACTGGCTTTGACCTACAGCGGGTTTTTGTTGCACTGGAAGCTCATTGATTGACAGGATCCTCCAGCAGTCCATACTTGCCCTCGAGTACTTTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305515 lncRNA downstream 3144 2924577 ~ 2929006 (-) True G269252
TU305513 lncRNA downstream 7733 2923145 ~ 2924417 (-) True G269250
TU305526 lncRNA downstream 75563 2855664 ~ 2856587 (-) True G269262
TU305115 lncRNA downstream 140556 2791370 ~ 2791594 (-) True G268923
TU305049 lncRNA downstream 227791 2704012 ~ 2704359 (-) True G268860
TU305573 lncRNA upstream 4374 2937920 ~ 2938284 (-) True G269302
TU305574 lncRNA upstream 5162 2938708 ~ 2939167 (-) True G269303
TU305575 lncRNA upstream 15999 2949545 ~ 2950332 (-) True G269304
TU305587 lncRNA upstream 44456 2978002 ~ 2978592 (-) True CI01000065_02979795_02989709
TU305614 lncRNA upstream 174742 3108288 ~ 3109555 (-) True G269337
CI01000065_02820772_02829132.mRNA mRNA downstream 103018 2819712 ~ 2829132 (-) True CI01000065_02820772_02829132
CI01000065_02679973_02700843.mRNA mRNA downstream 230706 2679839 ~ 2701444 (-) True CI01000065_02679973_02700843
CI01000065_02358877_02366169.mRNA mRNA downstream 565981 2358853 ~ 2366169 (-) False CI01000065_02358877_02366169
CI01000065_02288372_02357728.mRNA mRNA downstream 574422 2288372 ~ 2357728 (-) False CI01000065_02288372_02357728
CI01000065_01982908_01987337.mRNA mRNA downstream 944662 1982403 ~ 1987488 (-) False CI01000065_01982908_01987337
CI01000065_02940142_02940429.mRNA mRNA upstream 6508 2940054 ~ 2940813 (-) True CI01000065_02940142_02940429
CI01000065_02979795_02989709.mRNA mRNA upstream 44297 2977843 ~ 2989763 (-) False CI01000065_02979795_02989709
CI01000065_02992054_02993108.mRNA mRNA upstream 58269 2991815 ~ 2993167 (-) True CI01000065_02992054_02993108
CI01000065_03015397_03024204.mRNA mRNA upstream 81306 3014852 ~ 3024204 (-) True CI01000065_03015397_03024204
CI01000065_03037531_03045960.mRNA mRNA upstream 103815 3037361 ~ 3045960 (-) True CI01000065_03037531_03045960
TU303837 other downstream 2148489 783538 ~ 783661 (-) True G267748
TU303828 other downstream 2307493 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU303796 other downstream 2352123 554468 ~ 556828 (-) True G267718
TU303798 other downstream 2367936 554351 ~ 556828 (-) True G267718
TU303067 other downstream 2877763 54287 ~ 54387 (-) True G267025
TU305637 other upstream 374897 3308443 ~ 3312404 (-) False G269348
TU305628 other upstream 375242 3308788 ~ 3312404 (-) False G269348
TU305632 other upstream 375242 3308788 ~ 3312480 (-) True G269348
TU306020 other upstream 840334 3773880 ~ 3774294 (-) True G269679
TU305995 other upstream 859577 3807558 ~ 3810160 (-) False G269656

Expression Profile