Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU305216 |
| length | 716 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 4 |
| gene id | G268997 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000065 |
| NCBI id | null |
| chromosome length | 4956624 |
| location | 3000343 ~ 3001750 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU305215 | lncRNA | upstream | 559 | 2997536 ~ 2999784 (+) | True | G268996 |
| TU305193 | lncRNA | upstream | 49931 | 2949202 ~ 2950412 (+) | True | G268974 |
| TU305183 | lncRNA | upstream | 59736 | 2939188 ~ 2940607 (+) | True | G268965 |
| TU305127 | lncRNA | upstream | 198486 | 2801644 ~ 2801857 (+) | True | G268930 |
| TU305048 | lncRNA | upstream | 296732 | 2703400 ~ 2703611 (+) | True | G268859 |
| TU305166 | lncRNA | downstream | 8184 | 3009934 ~ 3037886 (+) | True | G268957 |
| TU305178 | lncRNA | downstream | 10743 | 3012493 ~ 3015502 (+) | True | G268960 |
| TU305182 | lncRNA | downstream | 16142 | 3017892 ~ 3023226 (+) | True | G268964 |
| TU305229 | lncRNA | downstream | 23458 | 3025208 ~ 3081681 (+) | True | G269005 |
| TU305253 | lncRNA | downstream | 106840 | 3108590 ~ 3108938 (+) | True | G269029 |
| CI01000065_02976459_02977209.mRNA | mRNA | upstream | 23123 | 2975351 ~ 2977220 (+) | True | CI01000065_02976459_02977209 |
| CI01000065_02961093_02964309.mRNA | mRNA | upstream | 36034 | 2961093 ~ 2964309 (+) | True | CI01000065_02961093_02964309 |
| CI01000065_02924635_02929062.mRNA | mRNA | upstream | 71251 | 2924635 ~ 2929092 (+) | True | CI01000065_02924635_02929062 |
| CI01000065_02896930_02919963.mRNA | mRNA | upstream | 80180 | 2896930 ~ 2920163 (+) | True | CI01000065_02896930_02919963 |
| CI01000065_02856492_02888060.mRNA | mRNA | upstream | 111888 | 2856492 ~ 2888455 (+) | True | CI01000065_02856492_02888060 |
| CI01000065_03002626_03002997.mRNA | mRNA | downstream | 837 | 3002587 ~ 3003015 (+) | True | CI01000065_03002626_03002997 |
| CI01000065_03027516_03035037.mRNA | mRNA | downstream | 25766 | 3027516 ~ 3035094 (+) | True | CI01000065_03027516_03035037 |
| CI01000065_03237462_03238124.mRNA | mRNA | downstream | 235624 | 3237374 ~ 3238153 (+) | True | CI01000065_03237462_03238124 |
| CI01000065_03244494_03285831.mRNA | mRNA | downstream | 242744 | 3244494 ~ 3285831 (+) | True | CI01000065_03244494_03285831 |
| CI01000065_03304326_03307505.mRNA | mRNA | downstream | 301975 | 3303725 ~ 3307557 (+) | True | CI01000065_03304326_03307505 |
| TU304991 | other | upstream | 362138 | 2608907 ~ 2638205 (+) | True | G268805 |
| TU304676 | other | upstream | 760345 | 2239159 ~ 2239998 (+) | True | G268525 |
| TU303653 | other | upstream | 1917688 | 1082153 ~ 1082655 (+) | True | G267577 |
| TU303494 | other | upstream | 2217464 | 782283 ~ 782879 (+) | True | G267432 |
| TU302970 | other | upstream | 2955677 | 43038 ~ 44666 (+) | True | G266932 |
| TU305428 | other | downstream | 457207 | 3458957 ~ 3462928 (+) | True | G269181 |
| TU305478 | other | downstream | 551054 | 3552804 ~ 3553124 (+) | False | G269225 |
