RNA id: TU305178


Basic Information

Item Value
RNA id TU305178
length 2986
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id G268960
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 3012493 ~ 3015502 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAAACTTATTTCATCTTTATTAGGTACTATCAAGAAATACATTTACTTGTGAGATCAAAGCACTGTGCATCAAATCATACACAACATTAGAACAGTTTCTTTTAATTAATTTTAAGAAATAAATATTTCTTGAGAATAAACAAAGTATTATTATTTTGCATAATTTCAGCTGAGAAAAATGAACCTTGAACCTTGTTGAAGACTTGCAACAAAATACCATTTGTAAAAGGAATTACATTCATGCAAACTGAAGTCTTGTTTTCAATGCTGTACTGTATATGCTCCAGATAATTCAGAGACAAACATATTATATGGAAACTACTCTCTTACTATCAGTGTCTGACACATAAGTGCAGGATTAGTGAAACACTTTGAAATGGTCTGTATTTCTGCATGAATGGCTCATAACATTGAGATCTGATCCATATTAATGAACAAAATATACCATTTAAAGTGCCAATTAAGTTTGATCTGAGGTGATGAGATGCTTGATTTATGTCTTATAAGGGTGTATATGATTACAAATATTTGAGACAATTTTTATGAGCCATTCCTACAGAAATTGAAGTTATTTTTTCCTAAATACATGCCAGCACATGCATAAAATAAATACACAGACACACACAAACACACACACTGACACACACACACACACACTGACACACACACACACACACACACACACAAAGAGTCCTACCCACCATCACAGAAATCAAAGGGGCTTGGGGCAAAAATGGCAACAAAATTAATAAAAATGCTCCCCAAAAATCAAGATATATGTGGCAAAAATATCCCTGTATGAATTCTTGTTTTTAATATTTATATCATAAACAAGAAGTTCATGTTAGGTGACTTAAAACCGAACAACTGAAGGAATCGTTTGACTGAATGATTGAATGACTCACTCGTTACAGTTTTCACAATCACTAGGACACATTTCTCAAATCTCTTCACAGTGATCACATTATCAGTCTATGTGAGCTAAACTGTGGATCATTTATCACTGCTTTGGCACACAATGCATTCAATGACTACATCTTTTGATTTACATGAATACATTCTCAATTAGACACAACTACCATAAAAACTCTGTGAACCTACAGGCCAATTTCCACATTTACATACTCTTTTATAAGACAGCAATTTGCTACATTTCTACAGTAAATACAGCACAAATACACTGTATATATACAGTATGTATTCACAATTGATTAATGTTATTGAACTGAACTGAATCAACACTGAACTGACGTGAGATGAATAATGACACTATTGACTTGTTAGAGCTGCTTTACAACAGAATTTGAACTTGTTACTCTTGTGAAGCTGCTTCGAAACAGTATGTATTGTATAAAGCACTATAGAAATAAAGGTTGACTTGTATGCATAATCAGTGTTGGAGCCATTATATTGAATTGTAATTTTTGTTTGTGACACTAGAGGGCATGTGAGTATATTTAACCCAAGTGCTAATGAGATACAGGTGGCGCAATGGAAGTGCAAACAAACTTTTTGACCGTGCCATGTCAAGCATGCAGCGTATCGTGCAGGACTGTGCTCGTGCCCGTTAACAGTTTGTTTTGAATGGTATTTTTGTTTTTTGAGTAGAAAATCGAAGTTAAATTTGAAGTTTTATTTTAATTTTATTTTTGTTATTTGCAATGCTAAATGGACAATAAATGGATTGGCATATCCGACTTTATTCCAAAGGTATGGACAATAACTTCATTTATTCAAGGCAAAGCACGCGTCAGAAACAGACTTCTAAACCCCATCTGCGTCCCTACAATCAGTATTTACAAAATAAACAGAAATGCAAGAGTGAAAAATGTATTTGTTTCTCAAATCATTGAGTTTTGATTTCTAAGTGATCAAATTAGGTATATTTACACTATAAACAGGAATGCAGGAGGTTAAAAAAATGATCAAAACGAGTTTTGATCAATTTATCAATAAGTGTTTTCACATGATCACTGGGTGTAGGTAATCGGGAAATGATTGTGGTATTAAATTTCTTAAATGAAACACAATAGCTGCTATTTTTTTAGTTATGTGTCTAATGTAGAGAACTGTGTTAAAAGTTTGTTTTACAATTGCAAACTAAGTGTAAAGCAGATAATGTGCTTGTATTTTTGCAGACTTAGTCTCAAGATTAGGTACATATGGCACGCACAGCAAGATCCTCGAGCAATGCCAAGAGTGCCAAGCAATGCCATCCTCAAAACAAGTTCAAACACAATAAACACCTGAGAAATGTGTCCTAGCGATTGTAAAAAAACTGTAAGAGAATGATTTGCTGCCACCTAGTTTTAGTTTCAGTACATTTTTTCCATGTTTATTTTCTATATTTATATCTGGCGTCTGCGGCTGATAAAATCATTCCTGCGGTCCAACATGCTGCAAGAAAGACTGTCCACACTTGCTCAGATGTCAACTGAACACGACGTTATGAGATCGCTGTATAAAGATAAACTTTCAGAGCTTTTGCAGCACTTCATTATCAGAAAGACATGCTCTAAATGTCAAAATCAGATCAACCTAAGTGTAAAACATTTCCTCTTGATGTAGCCTATTCTTATTCATATTGTATTAAATCACTTATCTAATCCCTATTATTTAATTTTTATTTTTTTGCTCTCATGGCCTTGGTCATTAACGCTGAGGGGCTGAGGGAGTGATGAAGATTGAATGTTGATTTTGTTCCCGGTCGTGATTGTAATGTGTGGATAGAATGCATTTTAAATAGACTATTAAGAGTAACATAAGGAGTTAATATAATAAACACAATGGTAAAGGCCACCTCTGACCCAAACACACACACACACACACACTCAGCACTGGAGCAGGATCCAGCACTTCAGTCAGGTTCAGCTCTCATCTTATCTGACTGCTTGCCAAATGATTATAGCAAAGATGGTTGCCACTAGCGACATGACAAGAGCCAGGATACACATCCTCTTGCGGGATTTTCTCTTTAAAGGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305216 lncRNA upstream 10743 3000343 ~ 3001750 (+) True G268997
TU305215 lncRNA upstream 12709 2997536 ~ 2999784 (+) True G268996
TU305193 lncRNA upstream 62081 2949202 ~ 2950412 (+) True G268974
TU305183 lncRNA upstream 71886 2939188 ~ 2940607 (+) True G268965
TU305127 lncRNA upstream 210636 2801644 ~ 2801857 (+) True G268930
TU305182 lncRNA downstream 2390 3017892 ~ 3023226 (+) True G268964
TU305229 lncRNA downstream 9706 3025208 ~ 3081681 (+) True G269005
TU305253 lncRNA downstream 93088 3108590 ~ 3108938 (+) True G269029
TU305259 lncRNA downstream 96345 3111847 ~ 3112914 (+) True G269033
TU305413 lncRNA downstream 422470 3437972 ~ 3438539 (+) True G269167
CI01000065_03002626_03002997.mRNA mRNA upstream 9478 3002587 ~ 3003015 (+) True CI01000065_03002626_03002997
CI01000065_02976459_02977209.mRNA mRNA upstream 35273 2975351 ~ 2977220 (+) True CI01000065_02976459_02977209
CI01000065_02961093_02964309.mRNA mRNA upstream 48184 2961093 ~ 2964309 (+) True CI01000065_02961093_02964309
CI01000065_02924635_02929062.mRNA mRNA upstream 83401 2924635 ~ 2929092 (+) True CI01000065_02924635_02929062
CI01000065_02896930_02919963.mRNA mRNA upstream 92330 2896930 ~ 2920163 (+) True CI01000065_02896930_02919963
CI01000065_03027516_03035037.mRNA mRNA downstream 12014 3027516 ~ 3035094 (+) True CI01000065_03027516_03035037
CI01000065_03237462_03238124.mRNA mRNA downstream 221872 3237374 ~ 3238153 (+) True CI01000065_03237462_03238124
CI01000065_03244494_03285831.mRNA mRNA downstream 228992 3244494 ~ 3285831 (+) True CI01000065_03244494_03285831
CI01000065_03304326_03307505.mRNA mRNA downstream 288223 3303725 ~ 3307557 (+) True CI01000065_03304326_03307505
CI01000065_03344678_03368295.mRNA mRNA downstream 328829 3344331 ~ 3368472 (+) True CI01000065_03344678_03368295
TU304991 other upstream 374288 2608907 ~ 2638205 (+) True G268805
TU304676 other upstream 772495 2239159 ~ 2239998 (+) True G268525
TU303653 other upstream 1929838 1082153 ~ 1082655 (+) True G267577
TU303494 other upstream 2229614 782283 ~ 782879 (+) True G267432
TU302970 other upstream 2967827 43038 ~ 44666 (+) True G266932
TU305428 other downstream 443455 3458957 ~ 3462928 (+) True G269181
TU305478 other downstream 537302 3552804 ~ 3553124 (+) False G269225

Expression Profile