RNA id: TU305253


Basic Information

Item Value
RNA id TU305253
length 349
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G269029
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 3108590 ~ 3108938 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTCCCTTTCACATTTTCTTGAGCTTGAATATTTAAACTGGCAAAGCTTTGTGACAATGCAACACTGCCCTGTCAGCTGTCCCGAGCGCTGTTCATGCTTCATGTTCATGTTCTCACAATTTTGTATTGTTAGAATTCATAAAATGTTAACGGCCAACTGTCGATTGACACCTTTCATACATTATACTCGCCAACACCGATTTTTACTCGCAATTGGCGCTTGGTAAAAAGCTGACTTGAAAAATTAACATTAATTTCCTGATGATCATATTCTCTTTGAGAAAATTACATAAGAGCATCTCATGCTTCAACTGACCGTTCACAAAGACCCGCCCCCTTTAGATACTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305229 lncRNA upstream 26909 3025208 ~ 3081681 (+) True G269005
TU305166 lncRNA upstream 70704 3009934 ~ 3037886 (+) True G268957
TU305182 lncRNA upstream 85364 3017892 ~ 3023226 (+) True G268964
TU305178 lncRNA upstream 93088 3012493 ~ 3015502 (+) True G268960
TU305216 lncRNA upstream 106840 3000343 ~ 3001750 (+) True G268997
TU305259 lncRNA downstream 2909 3111847 ~ 3112914 (+) True G269033
TU305413 lncRNA downstream 329034 3437972 ~ 3438539 (+) True G269167
TU305427 lncRNA downstream 350019 3458957 ~ 3461819 (+) False G269181
TU305452 lncRNA downstream 407356 3516294 ~ 3516541 (+) True G269205
TU305465 lncRNA downstream 433165 3542103 ~ 3542572 (+) True G269218
CI01000065_03027516_03035037.mRNA mRNA upstream 73496 3027516 ~ 3035094 (+) True CI01000065_03027516_03035037
CI01000065_03002626_03002997.mRNA mRNA upstream 105575 3002587 ~ 3003015 (+) True CI01000065_03002626_03002997
CI01000065_02976459_02977209.mRNA mRNA upstream 131370 2975351 ~ 2977220 (+) True CI01000065_02976459_02977209
CI01000065_02961093_02964309.mRNA mRNA upstream 144281 2961093 ~ 2964309 (+) True CI01000065_02961093_02964309
CI01000065_02924635_02929062.mRNA mRNA upstream 179498 2924635 ~ 2929092 (+) True CI01000065_02924635_02929062
CI01000065_03237462_03238124.mRNA mRNA downstream 128436 3237374 ~ 3238153 (+) True CI01000065_03237462_03238124
CI01000065_03244494_03285831.mRNA mRNA downstream 135556 3244494 ~ 3285831 (+) True CI01000065_03244494_03285831
CI01000065_03304326_03307505.mRNA mRNA downstream 194787 3303725 ~ 3307557 (+) True CI01000065_03304326_03307505
CI01000065_03344678_03368295.mRNA mRNA downstream 235393 3344331 ~ 3368472 (+) True CI01000065_03344678_03368295
CI01000065_03398558_03399971.mRNA mRNA downstream 289620 3398558 ~ 3400425 (+) True CI01000065_03398558_03399971
TU304991 other upstream 470385 2608907 ~ 2638205 (+) True G268805
TU304676 other upstream 868592 2239159 ~ 2239998 (+) True G268525
TU303653 other upstream 2025935 1082153 ~ 1082655 (+) True G267577
TU303494 other upstream 2325711 782283 ~ 782879 (+) True G267432
TU302970 other upstream 3063924 43038 ~ 44666 (+) True G266932
TU305428 other downstream 350019 3458957 ~ 3462928 (+) True G269181
TU305478 other downstream 443866 3552804 ~ 3553124 (+) False G269225

Expression Profile