RNA id: TCONS_00001371


Basic Information

Item Value
RNA id TCONS_00001371
length 1431
RNA type mRNA
GC content 0.47
exon number 3
gene id XLOC_000868
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58613972 ~ 58618868 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAGGTGCAGGTGGACGTGAGCTGCTGTAAATCAGTAGGAACTGATCTGTCCATGCTGGATATTGAGGATTTCATCAGTCAAATCTGTCAGCTGAAGAAAGAGGTGGCGTCGCTGGAGGCCAAgctgagagaaagaggagagaaaCTCCAGCCAGAGGATTCGCTGTGCGGCGTCAGAGCTCAGAGATCCAGAGACGCGCAGAACTCAGAGCTCAGCCTGACTTTACTCTGTTATACTGACGCTCAGGATCATCAGAGCTCTGAGCCAGACGCTGGAGAACAGCAGACCACACTGAAGATGTGCTCCGTCAGGCTGGAGGACTGCAGGAACCTGATCCAGAGAACTGAAAACACCACAGAAGAAGACGATCAGAGAGACCAGGAGGATGATGATGTTGATAATGATGAAAATGAAaaagatgacgatgatgatgaatTTATTCCTCCAGGTGACAACACTGGATCGTCTGATGAAGAAGCGCCGTTAACTTTGAAAGGTAAGCCGAAGGTCAAGAAGAGTTTCTCCTGCACCTCCTGTGGAAAAGCATTCGCCTGTCAAAGTTATTTATTGATTCATGAAAGAAAACACTCAGAACCGAAGGTCTTCATCTGCTGGAGATGTCGTAAGTGCTTTCCAACATTACAGGAGAGAAAACTTCACCTGAAAGAGCATCTGGCAGAAAAGGAGTTCCACTGTGAACAGTGCGGGAAGAACTTTTTATTGTCTAATCAGCTAAAAGTTCACATGAAGACGCACAGCGGTGACCAGCGTGTCCAGTGTGACGTATGCAACAAATCATTCAGCACCAAAGCAAACCTGGAGGTTCATAAGAGAATCCACACGGGCGAGCGGCCGTATAAATGCCCTCACTGCAAGAAGAGCTTTAATTACAAATCCTACATGAAGAACCACATCCGCATTCACACCAACGAGAGGCCGTACCAGTGCAGCGAGTGCGGAAAAACCTTCAAAACAAACAACTCTCTAAACTCTCATCTAAAATTCCACTCTGAGGAAAAACCGCATCAGTGCAAATACTGCGACAAGCGATTCCGCAtgaaagcaaatctgaatgtccatgagaggattcacaccggagagaagccgtaccTGTGCGCCGAATGCGGGAAGAGGGTTAAAACTTCTACTGAGCTGGTTTGTCACCaaagaatccacactggagaaaaaccgtacCTGTGCAACATATGTGGGCGGAGTTTCAGTAAACCAACCATCTTAATAAACCAcatgaggactcacactggagaaagACCCTATAaatgttcacactgcgacaagacgTTTGCACGATCTGACGTGCTGAAGACCCACGAGAGGGTTcataccggagagaaaccgtaccgCTGCTCCATCTGCGAAGAGAGGTTTGCGTATTTAGGAAGTTTTCAGAGCCACCAGAAGAAACAT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000162849

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003268 lncRNA upstream 19151 58588220 ~ 58595767 (+) True XLOC_000865
TCONS_00003267 lncRNA upstream 26443 58586353 ~ 58588475 (+) False XLOC_000865
TCONS_00003266 lncRNA upstream 29786 58577919 ~ 58585132 (+) True XLOC_000864
TCONS_00003265 lncRNA upstream 84433 58526391 ~ 58530485 (+) True XLOC_000862
TCONS_00001323 lncRNA upstream 597554 58003615 ~ 58017364 (+) True XLOC_000829
TCONS_00003269 lncRNA downstream 28338 58646685 ~ 58669075 (+) True XLOC_000871
TCONS_00002891 lncRNA downstream 159706 58778053 ~ 58782292 (+) True XLOC_000874
TCONS_00002892 lncRNA downstream 234823 58853170 ~ 58854124 (+) False XLOC_000876
TCONS_00003270 lncRNA downstream 235014 58853361 ~ 58854377 (+) False XLOC_000876
TCONS_00003271 lncRNA downstream 235017 58853364 ~ 58854377 (+) False XLOC_000876
TCONS_00001367 mRNA upstream 1431 58608978 ~ 58613487 (+) False XLOC_000867
TCONS_00001368 mRNA upstream 1587 58609885 ~ 58613331 (+) True XLOC_000867
TCONS_00001365 mRNA upstream 8428 58601680 ~ 58606490 (+) False XLOC_000866
TCONS_00001366 mRNA upstream 8697 58602506 ~ 58606221 (+) True XLOC_000866
TCONS_00001364 mRNA upstream 77562 58535306 ~ 58537356 (+) True XLOC_000863
TCONS_00001372 mRNA downstream 2606 58620953 ~ 58622498 (+) True XLOC_000869
TCONS_00001373 mRNA downstream 9818 58628165 ~ 58632064 (+) True XLOC_000870
TCONS_00001374 mRNA downstream 59087 58677434 ~ 58681545 (+) True XLOC_000872
TCONS_00001375 mRNA downstream 116979 58735326 ~ 58744037 (+) True XLOC_000873
TCONS_00001376 mRNA downstream 222542 58840889 ~ 58850686 (+) True XLOC_000875
TCONS_00001335 other upstream 441329 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001304 other upstream 1259885 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001233 other upstream 3317667 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 3486339 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 4428762 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001394 other downstream 512945 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

//