RNA id: TU305713


Basic Information

Item Value
RNA id TU305713
length 292
lncRNA type antisense_over
GC content 0.49
exon number 3
gene id G269399
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 3490572 ~ 3491380 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCACAGTTCCAAGACCAAGAAATGTTCCCGAGTCACTCACTGCAAGACAAGATATAACTTCATTTCCACAAGGCTTCGTGAGCAGCGGCAGGAAAGCGCGTCCGTCCCATTTGGTGATGTAGCATTGTGGGGGTTTTCGCTCCCGTTTGTGAGGGATTTGGATCGTGTAGAGTCTTAAAGCATCTTTCTGATCCTCTACTTTTGCAAACCTGCATGCCTTGTAGCGGTATGTCTTCTCAGTGATCTGAGGCATGCTTTCATGCCAACACAAACCCACGGCCAGCTGATCGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305764 lncRNA downstream 53182 3437138 ~ 3437390 (-) True G269440
TU305760 lncRNA downstream 93213 3397110 ~ 3397359 (-) True G269436
TU305744 lncRNA downstream 137669 3351600 ~ 3352903 (-) True G269424
TU305636 lncRNA downstream 185033 3304357 ~ 3305539 (-) False G269348
TU305614 lncRNA downstream 381017 3108288 ~ 3109555 (-) True G269337
TU305770 lncRNA upstream 4708 3496088 ~ 3496312 (-) True G269446
TU305772 lncRNA upstream 26356 3517736 ~ 3518149 (-) True G269448
TU305787 lncRNA upstream 60423 3551803 ~ 3552012 (-) True G269461
TU305788 lncRNA upstream 61509 3552889 ~ 3553113 (-) True G269462
TU305789 lncRNA upstream 62937 3554317 ~ 3554526 (-) True G269463
CI01000065_03442791_03477709.mRNA mRNA downstream 12863 3442595 ~ 3477709 (-) True CI01000065_03442791_03477709
CI01000065_03413002_03434286.mRNA mRNA downstream 56286 3412729 ~ 3434286 (-) True CI01000065_03413002_03434286
CI01000065_03385522_03396519.mRNA mRNA downstream 93491 3385522 ~ 3397081 (-) True CI01000065_03385522_03396519
CI01000065_03373810_03377138.mRNA mRNA downstream 113434 3372703 ~ 3377138 (-) True CI01000065_03373810_03377138
CI01000065_03369379_03371121.mRNA mRNA downstream 119131 3368919 ~ 3371441 (-) True CI01000065_03369379_03371121
CI01000065_03544613_03551034.mRNA mRNA upstream 53151 3544531 ~ 3551034 (-) True CI01000065_03544613_03551034
CI01000065_03589916_03598053.mRNA mRNA upstream 98391 3589771 ~ 3598146 (-) True CI01000065_03589916_03598053
CI01000065_03602063_03603667.mRNA mRNA upstream 109382 3600762 ~ 3605308 (-) True CI01000065_03602063_03603667
CI01000065_03648940_03692253.mRNA mRNA upstream 157023 3648403 ~ 3692368 (-) True CI01000065_03648940_03692253
CI01000065_03694059_03694764.mRNA mRNA upstream 202427 3693807 ~ 3694764 (-) True CI01000065_03694059_03694764
TU305632 other downstream 178092 3308788 ~ 3312480 (-) True G269348
TU305637 other downstream 178168 3308443 ~ 3312404 (-) False G269348
TU305628 other downstream 178168 3308788 ~ 3312404 (-) False G269348
TU303837 other downstream 2706911 783538 ~ 783661 (-) True G267748
TU303828 other downstream 2865915 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU306020 other upstream 282500 3773880 ~ 3774294 (-) True G269679
TU305995 other upstream 301743 3807558 ~ 3810160 (-) False G269656
TU305996 other upstream 301866 3807558 ~ 3810243 (-) True G269656

Expression Profile