RNA id: TU305474


Basic Information

Item Value
RNA id TU305474
length 222
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G269223
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 3551770 ~ 3551991 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGACAGTATTAAATTTAATACTTAAATCATGACATAAAATTAACAGTTCAGATGGACCTGTAGGAAGATAACAATAATAAATGTATTAACATTAAAGGAATAGTTCACCCAAAAATGAAAATTCTCTCATCATTTACTCGCTCTCAAGTTGTTTTAAACCTGAATGAATTTCTTTCTTCTGCTGAACACAAAATAAGATATTTTGAAAAATGTGGGTTGCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305465 lncRNA upstream 9198 3542103 ~ 3542572 (+) True G269218
TU305452 lncRNA upstream 35229 3516294 ~ 3516541 (+) True G269205
TU305427 lncRNA upstream 89951 3458957 ~ 3461819 (+) False G269181
TU305413 lncRNA upstream 113231 3437972 ~ 3438539 (+) True G269167
TU305259 lncRNA upstream 438856 3111847 ~ 3112914 (+) True G269033
TU305476 lncRNA downstream 842 3552833 ~ 3553124 (+) False G269225
TU305479 lncRNA downstream 842 3552833 ~ 3553214 (+) False G269225
TU305477 lncRNA downstream 896 3552887 ~ 3553124 (+) True G269225
TU305487 lncRNA downstream 15340 3567331 ~ 3567533 (+) True G269232
TU305493 lncRNA downstream 28065 3580056 ~ 3580380 (+) True G269238
CI01000065_03486630_03494354.mRNA mRNA upstream 56030 3486567 ~ 3495740 (+) True CI01000065_03486630_03494354
CI01000065_03398558_03399971.mRNA mRNA upstream 151345 3398558 ~ 3400425 (+) True CI01000065_03398558_03399971
CI01000065_03344678_03368295.mRNA mRNA upstream 183298 3344331 ~ 3368472 (+) True CI01000065_03344678_03368295
CI01000065_03304326_03307505.mRNA mRNA upstream 244213 3303725 ~ 3307557 (+) True CI01000065_03304326_03307505
CI01000065_03244494_03285831.mRNA mRNA upstream 265939 3244494 ~ 3285831 (+) True CI01000065_03244494_03285831
CI01000065_03692428_03692874.mRNA mRNA downstream 140437 3692428 ~ 3693420 (+) True CI01000065_03692428_03692874
CI01000065_03709249_03716992.mRNA mRNA downstream 157153 3709144 ~ 3717908 (+) True CI01000065_03709249_03716992
CI01000065_03815841_03816140.mRNA mRNA downstream 260867 3812858 ~ 3816590 (+) True CI01000065_03815841_03816140
CI01000065_03980525_03983765.mRNA mRNA downstream 428534 3980525 ~ 3984923 (+) True CI01000065_03980525_03983765
CI01000065_03986974_04006773.mRNA mRNA downstream 434983 3986974 ~ 4007259 (+) True CI01000065_03986974_04006773
TU305428 other upstream 88842 3458957 ~ 3462928 (+) True G269181
TU304991 other upstream 913565 2608907 ~ 2638205 (+) True G268805
TU304676 other upstream 1311772 2239159 ~ 2239998 (+) True G268525
TU303653 other upstream 2469115 1082153 ~ 1082655 (+) True G267577
TU303494 other upstream 2768891 782283 ~ 782879 (+) True G267432
TU305478 other downstream 813 3552804 ~ 3553124 (+) False G269225

Expression Profile