RNA id: TU305477


Basic Information

Item Value
RNA id TU305477
length 238
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G269225
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 3552804 ~ 3553214 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGCGGCAACCAGGTGAGGAGTACAAAGACAAGTGTGTCTTGCCTACAGTCAAGCATGGTGGTGGGAGTGTCATGGTCTGGGGCTGCATGAGTGCTGCCGGCACTGGGGAGCTACAGTTCATTGAGGGAACCATGAATGTCAACATGTACTGTGACATACTGAAGCAGAGCATGATCCCCTCCCTTCGGAGACTGGGCCGCAGGGCAGTATTCCAACATGATAACGACCCCAAACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305474 lncRNA upstream 896 3551770 ~ 3551991 (+) True G269223
TU305465 lncRNA upstream 10315 3542103 ~ 3542572 (+) True G269218
TU305452 lncRNA upstream 36346 3516294 ~ 3516541 (+) True G269205
TU305427 lncRNA upstream 91068 3458957 ~ 3461819 (+) False G269181
TU305413 lncRNA upstream 114348 3437972 ~ 3438539 (+) True G269167
TU305487 lncRNA downstream 14207 3567331 ~ 3567533 (+) True G269232
TU305493 lncRNA downstream 26932 3580056 ~ 3580380 (+) True G269238
TU305495 lncRNA downstream 29809 3582933 ~ 3583163 (+) True G269240
TU305836 lncRNA downstream 77560 3630684 ~ 3631579 (+) True G269505
TU305831 lncRNA downstream 140733 3693857 ~ 3695267 (+) True G269501
CI01000065_03486630_03494354.mRNA mRNA upstream 57147 3486567 ~ 3495740 (+) True CI01000065_03486630_03494354
CI01000065_03398558_03399971.mRNA mRNA upstream 152462 3398558 ~ 3400425 (+) True CI01000065_03398558_03399971
CI01000065_03344678_03368295.mRNA mRNA upstream 184415 3344331 ~ 3368472 (+) True CI01000065_03344678_03368295
CI01000065_03304326_03307505.mRNA mRNA upstream 245330 3303725 ~ 3307557 (+) True CI01000065_03304326_03307505
CI01000065_03244494_03285831.mRNA mRNA upstream 267056 3244494 ~ 3285831 (+) True CI01000065_03244494_03285831
CI01000065_03692428_03692874.mRNA mRNA downstream 139304 3692428 ~ 3693420 (+) True CI01000065_03692428_03692874
CI01000065_03709249_03716992.mRNA mRNA downstream 156020 3709144 ~ 3717908 (+) True CI01000065_03709249_03716992
CI01000065_03815841_03816140.mRNA mRNA downstream 259734 3812858 ~ 3816590 (+) True CI01000065_03815841_03816140
CI01000065_03980525_03983765.mRNA mRNA downstream 427401 3980525 ~ 3984923 (+) True CI01000065_03980525_03983765
CI01000065_03986974_04006773.mRNA mRNA downstream 433850 3986974 ~ 4007259 (+) True CI01000065_03986974_04006773
TU305428 other upstream 89959 3458957 ~ 3462928 (+) True G269181
TU304991 other upstream 914682 2608907 ~ 2638205 (+) True G268805
TU304676 other upstream 1312889 2239159 ~ 2239998 (+) True G268525
TU303653 other upstream 2470232 1082153 ~ 1082655 (+) True G267577
TU303494 other upstream 2770008 782283 ~ 782879 (+) True G267432

Expression Profile