RNA id: TU305788


Basic Information

Item Value
RNA id TU305788
length 225
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G269462
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 3552889 ~ 3553113 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCGTTATCATGTTGGAATACTGCCCTGCGGCCCAGTCTCCGAAGGGAGGGGATCATGCTCTGCTTCAGTATGTCACAGTACATGTTGACATTCATGGTTCCCTCAATGAACTGTAGCTCCCCAGTGCCGGCAGCACTCATGCAGCCCCAGACCATGACACTCCCACCACCATGCTTGACTGTAGGCAAGACACACTTGTCTTTGTACTCCTCACCTGGTTGCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305787 lncRNA downstream 877 3551803 ~ 3552012 (-) True G269461
TU305772 lncRNA downstream 34740 3517736 ~ 3518149 (-) True G269448
TU305770 lncRNA downstream 56577 3496088 ~ 3496312 (-) True G269446
TU305713 lncRNA downstream 61509 3490572 ~ 3491380 (-) True G269399
TU305764 lncRNA downstream 115499 3437138 ~ 3437390 (-) True G269440
TU305789 lncRNA upstream 1204 3554317 ~ 3554526 (-) True G269463
TU305796 lncRNA upstream 24376 3577489 ~ 3577738 (-) True G269470
TU305968 lncRNA upstream 87007 3640120 ~ 3640411 (-) True G269629
TU305969 lncRNA upstream 87640 3640753 ~ 3640997 (-) True G269630
TU305984 lncRNA upstream 161734 3714847 ~ 3715306 (-) True G269645
CI01000065_03544613_03551034.mRNA mRNA downstream 1855 3544531 ~ 3551034 (-) True CI01000065_03544613_03551034
CI01000065_03442791_03477709.mRNA mRNA downstream 75180 3442595 ~ 3477709 (-) True CI01000065_03442791_03477709
CI01000065_03413002_03434286.mRNA mRNA downstream 118603 3412729 ~ 3434286 (-) True CI01000065_03413002_03434286
CI01000065_03385522_03396519.mRNA mRNA downstream 155808 3385522 ~ 3397081 (-) True CI01000065_03385522_03396519
CI01000065_03373810_03377138.mRNA mRNA downstream 175751 3372703 ~ 3377138 (-) True CI01000065_03373810_03377138
CI01000065_03589916_03598053.mRNA mRNA upstream 36658 3589771 ~ 3598146 (-) True CI01000065_03589916_03598053
CI01000065_03602063_03603667.mRNA mRNA upstream 47649 3600762 ~ 3605308 (-) True CI01000065_03602063_03603667
CI01000065_03648940_03692253.mRNA mRNA upstream 95290 3648403 ~ 3692368 (-) True CI01000065_03648940_03692253
CI01000065_03694059_03694764.mRNA mRNA upstream 140694 3693807 ~ 3694764 (-) True CI01000065_03694059_03694764
CI01000065_03701147_03703052.mRNA mRNA upstream 148018 3701131 ~ 3703052 (-) True CI01000065_03701147_03703052
TU305632 other downstream 240409 3308788 ~ 3312480 (-) True G269348
TU305637 other downstream 240485 3308443 ~ 3312404 (-) False G269348
TU305628 other downstream 240485 3308788 ~ 3312404 (-) False G269348
TU303837 other downstream 2769228 783538 ~ 783661 (-) True G267748
TU303828 other downstream 2928232 622432 ~ 624657 (-) True CI01000065_00622545_00624625
TU306020 other upstream 220767 3773880 ~ 3774294 (-) True G269679
TU305995 other upstream 240010 3807558 ~ 3810160 (-) False G269656
TU305996 other upstream 240133 3807558 ~ 3810243 (-) True G269656

Expression Profile