RNA id: TU305875



Basic Information


Item Value
RNA id TU305875
length 202
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G269543
representative True

Chromosome Information


Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 3705676 ~ 3705877 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAGTCCTCAGTGGCTCAGATGTTGGGAGAAAATGAAGACTCCAATGTCACTCTTACATCCAACAACAGAACAGCGGGATTGCTTACGAGACGTTGTTGTCGGTAAAGCTGCTCGAGCGCAGAGAAAATGACAGACAACGTACAACTCGCTGAGGGCGGAAACTATGTTAATGCAGGACTGTCAGTCAGCGGCCGTGGGCGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU305831 lncRNA upstream 10409 3693857 ~ 3695267 (+) True G269501
TU305836 lncRNA upstream 74097 3630684 ~ 3631579 (+) True G269505
TU305495 lncRNA upstream 122513 3582933 ~ 3583163 (+) True G269240
TU305493 lncRNA upstream 125296 3580056 ~ 3580380 (+) True G269238
TU305487 lncRNA upstream 138143 3567331 ~ 3567533 (+) True G269232
TU305877 lncRNA downstream 3851 3709728 ~ 3709996 (+) True G269545
TU305878 lncRNA downstream 4131 3710008 ~ 3710242 (+) True G269546
TU305880 lncRNA downstream 16417 3722294 ~ 3722609 (+) True G269548
TU305906 lncRNA downstream 41311 3747188 ~ 3747403 (+) True G269573
TU305917 lncRNA downstream 55950 3761827 ~ 3770490 (+) False G269581
CI01000065_03692428_03692874.mRNA mRNA upstream 12256 3692428 ~ 3693420 (+) True CI01000065_03692428_03692874
CI01000065_03486630_03494354.mRNA mRNA upstream 209936 3486567 ~ 3495740 (+) True CI01000065_03486630_03494354
CI01000065_03398558_03399971.mRNA mRNA upstream 305251 3398558 ~ 3400425 (+) True CI01000065_03398558_03399971
CI01000065_03344678_03368295.mRNA mRNA upstream 337204 3344331 ~ 3368472 (+) True CI01000065_03344678_03368295
CI01000065_03304326_03307505.mRNA mRNA upstream 398119 3303725 ~ 3307557 (+) True CI01000065_03304326_03307505
CI01000065_03709249_03716992.mRNA mRNA downstream 3267 3709144 ~ 3717908 (+) True CI01000065_03709249_03716992
CI01000065_03815841_03816140.mRNA mRNA downstream 106981 3812858 ~ 3816590 (+) True CI01000065_03815841_03816140
CI01000065_03980525_03983765.mRNA mRNA downstream 274648 3980525 ~ 3984923 (+) True CI01000065_03980525_03983765
CI01000065_03986974_04006773.mRNA mRNA downstream 281097 3986974 ~ 4007259 (+) True CI01000065_03986974_04006773
CI01000065_04008274_04010105.mRNA mRNA downstream 302397 4008274 ~ 4010194 (+) True CI01000065_04008274_04010105
TU305478 other upstream 152552 3552804 ~ 3553124 (+) False G269225
TU305428 other upstream 242748 3458957 ~ 3462928 (+) True G269181
TU304991 other upstream 1067471 2608907 ~ 2638205 (+) True G268805
TU304676 other upstream 1465678 2239159 ~ 2239998 (+) True G268525
TU303653 other upstream 2623021 1082153 ~ 1082655 (+) True G267577

Expression Profile