RNA id: TU305880


Basic Information

Item Value
RNA id TU305880
length 316
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G269548
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 3722294 ~ 3722609 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCTCTTACTAGGGGTGGGCATTTTGCCAAAATATTGTATTCGAATATTTGGGCTCGTAAAAAACGAATATTCGAATATTTCGTTTATTTAAATGACGTTAAACGAGAAATACTTTTTTTTTAAATTCATCATGATTTTGTAACCATTTCTGTTCAAGCTTACGATTAGTCAATATATAGAACAAGCTTACATTATATCTTAAGGTTTTCTTTTAGTTCAAAGCATTAAACAATATGTGTAAACCAAAAATTATAAAGAAAAATGCATTTAAGCTCAAGCAGCGCGAACAGGAAAAATGCTAATAAAGCAGACGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305878 lncRNA upstream 12052 3710008 ~ 3710242 (+) True G269546
TU305877 lncRNA upstream 12298 3709728 ~ 3709996 (+) True G269545
TU305875 lncRNA upstream 16417 3705676 ~ 3705877 (+) True G269543
TU305831 lncRNA upstream 27027 3693857 ~ 3695267 (+) True G269501
TU305836 lncRNA upstream 90715 3630684 ~ 3631579 (+) True G269505
TU305906 lncRNA downstream 24579 3747188 ~ 3747403 (+) True G269573
TU305917 lncRNA downstream 39218 3761827 ~ 3770490 (+) False G269581
TU305914 lncRNA downstream 39484 3762093 ~ 3770490 (+) False G269581
TU305915 lncRNA downstream 39484 3762093 ~ 3770605 (+) False G269581
TU305918 lncRNA downstream 39484 3762093 ~ 3770490 (+) True G269581
CI01000065_03709249_03716992.mRNA mRNA upstream 4386 3709144 ~ 3717908 (+) True CI01000065_03709249_03716992
CI01000065_03692428_03692874.mRNA mRNA upstream 28874 3692428 ~ 3693420 (+) True CI01000065_03692428_03692874
CI01000065_03486630_03494354.mRNA mRNA upstream 226554 3486567 ~ 3495740 (+) True CI01000065_03486630_03494354
CI01000065_03398558_03399971.mRNA mRNA upstream 321869 3398558 ~ 3400425 (+) True CI01000065_03398558_03399971
CI01000065_03344678_03368295.mRNA mRNA upstream 353822 3344331 ~ 3368472 (+) True CI01000065_03344678_03368295
CI01000065_03815841_03816140.mRNA mRNA downstream 90249 3812858 ~ 3816590 (+) True CI01000065_03815841_03816140
CI01000065_03980525_03983765.mRNA mRNA downstream 257916 3980525 ~ 3984923 (+) True CI01000065_03980525_03983765
CI01000065_03986974_04006773.mRNA mRNA downstream 264365 3986974 ~ 4007259 (+) True CI01000065_03986974_04006773
CI01000065_04008274_04010105.mRNA mRNA downstream 285665 4008274 ~ 4010194 (+) True CI01000065_04008274_04010105
CI01000065_04044257_04051771.mRNA mRNA downstream 321648 4044257 ~ 4052283 (+) True CI01000065_04044257_04051771
TU305478 other upstream 169170 3552804 ~ 3553124 (+) False G269225
TU305428 other upstream 259366 3458957 ~ 3462928 (+) True G269181
TU304991 other upstream 1084089 2608907 ~ 2638205 (+) True G268805
TU304676 other upstream 1482296 2239159 ~ 2239998 (+) True G268525
TU303653 other upstream 2639639 1082153 ~ 1082655 (+) True G267577

Expression Profile