RNA id: TU305923


Basic Information

Item Value
RNA id TU305923
length 290
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G269586
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 3786638 ~ 3786927 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTTGTAGGTCATTAGCAGTACTTTATAATCGATACGGAACTTAATAGGTAACCAGTGTAGAGATGATAAAATTGGTGTTATATGATCATATTTTCTTGACCTGGTAAGAACTCTAGCAGCTGCATTTTGTACTAATTGTAGCTTGTTTATTGAGGAAGCAGGACAACCAGCTAGTAATGCATTACAGTAATCTAGTCTAGACGTCATGAAAGCATGAACTAACTTTTCTGCATCAGAAACAGATAACATATTCCGTATCTTAGCAATGTTTCTGAGGTGGAAGAAGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305915 lncRNA upstream 16033 3762093 ~ 3770605 (+) False G269581
TU305917 lncRNA upstream 16148 3761827 ~ 3770490 (+) False G269581
TU305914 lncRNA upstream 16148 3762093 ~ 3770490 (+) False G269581
TU305918 lncRNA upstream 16148 3762093 ~ 3770490 (+) True G269581
TU305906 lncRNA upstream 39235 3747188 ~ 3747403 (+) True G269573
TU305924 lncRNA downstream 270 3787197 ~ 3787434 (+) True G269587
TU305900 lncRNA downstream 6318 3793245 ~ 3803674 (+) True G269567
TU305902 lncRNA downstream 11230 3798157 ~ 3802643 (+) True G269569
TU305929 lncRNA downstream 37665 3824592 ~ 3824811 (+) True G269592
TU305942 lncRNA downstream 69072 3855999 ~ 3856276 (+) True G269605
CI01000065_03709249_03716992.mRNA mRNA upstream 68730 3709144 ~ 3717908 (+) True CI01000065_03709249_03716992
CI01000065_03692428_03692874.mRNA mRNA upstream 93218 3692428 ~ 3693420 (+) True CI01000065_03692428_03692874
CI01000065_03486630_03494354.mRNA mRNA upstream 290898 3486567 ~ 3495740 (+) True CI01000065_03486630_03494354
CI01000065_03398558_03399971.mRNA mRNA upstream 386213 3398558 ~ 3400425 (+) True CI01000065_03398558_03399971
CI01000065_03344678_03368295.mRNA mRNA upstream 418166 3344331 ~ 3368472 (+) True CI01000065_03344678_03368295
CI01000065_03815841_03816140.mRNA mRNA downstream 25931 3812858 ~ 3816590 (+) True CI01000065_03815841_03816140
CI01000065_03980525_03983765.mRNA mRNA downstream 193598 3980525 ~ 3984923 (+) True CI01000065_03980525_03983765
CI01000065_03986974_04006773.mRNA mRNA downstream 200047 3986974 ~ 4007259 (+) True CI01000065_03986974_04006773
CI01000065_04008274_04010105.mRNA mRNA downstream 221347 4008274 ~ 4010194 (+) True CI01000065_04008274_04010105
CI01000065_04044257_04051771.mRNA mRNA downstream 257330 4044257 ~ 4052283 (+) True CI01000065_04044257_04051771
TU305478 other upstream 233514 3552804 ~ 3553124 (+) False G269225
TU305428 other upstream 323710 3458957 ~ 3462928 (+) True G269181
TU304991 other upstream 1148433 2608907 ~ 2638205 (+) True G268805
TU304676 other upstream 1546640 2239159 ~ 2239998 (+) True G268525
TU303653 other upstream 2703983 1082153 ~ 1082655 (+) True G267577

Expression Profile