Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU305900 |
| length | 1361 |
| lncRNA type | antisense_over |
| GC content | 0.36 |
| exon number | 2 |
| gene id | G269567 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000065 |
| NCBI id | null |
| chromosome length | 4956624 |
| location | 3793245 ~ 3803674 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU305924 | lncRNA | upstream | 5811 | 3787197 ~ 3787434 (+) | True | G269587 |
| TU305923 | lncRNA | upstream | 6318 | 3786638 ~ 3786927 (+) | True | G269586 |
| TU305915 | lncRNA | upstream | 22640 | 3762093 ~ 3770605 (+) | False | G269581 |
| TU305917 | lncRNA | upstream | 22755 | 3761827 ~ 3770490 (+) | False | G269581 |
| TU305929 | lncRNA | downstream | 20918 | 3824592 ~ 3824811 (+) | True | G269592 |
| TU305942 | lncRNA | downstream | 52325 | 3855999 ~ 3856276 (+) | True | G269605 |
| TU305944 | lncRNA | downstream | 55849 | 3859523 ~ 3859979 (+) | True | G269607 |
| TU306087 | lncRNA | downstream | 99705 | 3903379 ~ 3903627 (+) | True | G269733 |
| TU306088 | lncRNA | downstream | 100417 | 3904091 ~ 3904490 (+) | True | G269734 |
| CI01000065_03709249_03716992.mRNA | mRNA | upstream | 75337 | 3709144 ~ 3717908 (+) | True | CI01000065_03709249_03716992 |
| CI01000065_03692428_03692874.mRNA | mRNA | upstream | 99825 | 3692428 ~ 3693420 (+) | True | CI01000065_03692428_03692874 |
| CI01000065_03486630_03494354.mRNA | mRNA | upstream | 297505 | 3486567 ~ 3495740 (+) | True | CI01000065_03486630_03494354 |
| CI01000065_03398558_03399971.mRNA | mRNA | upstream | 392820 | 3398558 ~ 3400425 (+) | True | CI01000065_03398558_03399971 |
| CI01000065_03344678_03368295.mRNA | mRNA | upstream | 424773 | 3344331 ~ 3368472 (+) | True | CI01000065_03344678_03368295 |
| CI01000065_03815841_03816140.mRNA | mRNA | downstream | 9184 | 3812858 ~ 3816590 (+) | True | CI01000065_03815841_03816140 |
| CI01000065_03980525_03983765.mRNA | mRNA | downstream | 176851 | 3980525 ~ 3984923 (+) | True | CI01000065_03980525_03983765 |
| CI01000065_03986974_04006773.mRNA | mRNA | downstream | 183300 | 3986974 ~ 4007259 (+) | True | CI01000065_03986974_04006773 |
| CI01000065_04008274_04010105.mRNA | mRNA | downstream | 204600 | 4008274 ~ 4010194 (+) | True | CI01000065_04008274_04010105 |
| CI01000065_04044257_04051771.mRNA | mRNA | downstream | 240583 | 4044257 ~ 4052283 (+) | True | CI01000065_04044257_04051771 |
| TU305478 | other | upstream | 240121 | 3552804 ~ 3553124 (+) | False | G269225 |
| TU305428 | other | upstream | 330317 | 3458957 ~ 3462928 (+) | True | G269181 |
| TU304991 | other | upstream | 1155040 | 2608907 ~ 2638205 (+) | True | G268805 |
| TU304676 | other | upstream | 1553247 | 2239159 ~ 2239998 (+) | True | G268525 |
| TU303653 | other | upstream | 2710590 | 1082153 ~ 1082655 (+) | True | G267577 |
