RNA id: TU306100


Basic Information

Item Value
RNA id TU306100
length 237
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G269746
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 3909677 ~ 3909913 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGAGATCCTGCGAGATGAGATCTACTACATCTACTACAGCTGTGAAGCTGCACACAATAAAGAAAAGTGCTTGCATGATCTCATATAAAAGTGGAGCAAGCCGAGTCCTTTGATGTTCTTCTTGTTGTGCTGCATGGGGCGCACATGGCCAGCTCATGAGCATGACTATTAAAGTTCTGTGAGAGCTGAGAGGCCCTGTCGGCTCAGTCTTCTTTGCTGTTATGTCTATCACTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306088 lncRNA upstream 5187 3904091 ~ 3904490 (+) True G269734
TU306087 lncRNA upstream 6050 3903379 ~ 3903627 (+) True G269733
TU305944 lncRNA upstream 49698 3859523 ~ 3859979 (+) True G269607
TU305942 lncRNA upstream 53401 3855999 ~ 3856276 (+) True G269605
TU305929 lncRNA upstream 84866 3824592 ~ 3824811 (+) True G269592
TU306144 lncRNA downstream 32440 3942353 ~ 3942678 (+) True G269790
TU306145 lncRNA downstream 33068 3942981 ~ 3943191 (+) True G269791
TU306160 lncRNA downstream 53028 3962941 ~ 3963163 (+) True G269806
TU306165 lncRNA downstream 58515 3968428 ~ 3968641 (+) True G269811
TU306168 lncRNA downstream 66162 3976075 ~ 3976395 (+) True G269814
CI01000065_03815841_03816140.mRNA mRNA upstream 93087 3812858 ~ 3816590 (+) True CI01000065_03815841_03816140
CI01000065_03709249_03716992.mRNA mRNA upstream 191769 3709144 ~ 3717908 (+) True CI01000065_03709249_03716992
CI01000065_03692428_03692874.mRNA mRNA upstream 216257 3692428 ~ 3693420 (+) True CI01000065_03692428_03692874
CI01000065_03486630_03494354.mRNA mRNA upstream 413937 3486567 ~ 3495740 (+) True CI01000065_03486630_03494354
CI01000065_03398558_03399971.mRNA mRNA upstream 509252 3398558 ~ 3400425 (+) True CI01000065_03398558_03399971
CI01000065_03980525_03983765.mRNA mRNA downstream 70612 3980525 ~ 3984923 (+) True CI01000065_03980525_03983765
CI01000065_03986974_04006773.mRNA mRNA downstream 77061 3986974 ~ 4007259 (+) True CI01000065_03986974_04006773
CI01000065_04008274_04010105.mRNA mRNA downstream 98361 4008274 ~ 4010194 (+) True CI01000065_04008274_04010105
CI01000065_04044257_04051771.mRNA mRNA downstream 134344 4044257 ~ 4052283 (+) True CI01000065_04044257_04051771
CI01000065_04081314_04103789.mRNA mRNA downstream 171401 4081314 ~ 4103961 (+) True CI01000065_04081314_04103789
TU305478 other upstream 356553 3552804 ~ 3553124 (+) False G269225
TU305428 other upstream 446749 3458957 ~ 3462928 (+) True G269181
TU304991 other upstream 1271472 2608907 ~ 2638205 (+) True G268805
TU304676 other upstream 1669679 2239159 ~ 2239998 (+) True G268525
TU303653 other upstream 2827022 1082153 ~ 1082655 (+) True G267577

Expression Profile