RNA id: TU306139


Basic Information

Item Value
RNA id TU306139
length 230
lncRNA type intronic
GC content 0.46
exon number 1
gene id G269785
representative True

Chromosome Information

Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 3937688 ~ 3937917 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCACATTGTAGACACTTTTGTCATCATAGGCACTCTGATTGGTCTGTGGCTACGCAGCCCCATACACAGCAGAGTGTGATGCACTGTGTGTTGTGACACATTTCTCCCATAACCATAGTTAAATTTTTGCGTGACTTGTGCCACAGTAGGCCTTCTGTTGACTCTGACCCAATCGGCTTTCCATAACAATTTGGCCCTTGTCAAAGTTGCTCAGATCTTTATTCCTGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306134 lncRNA downstream 3506 3933983 ~ 3934182 (-) True G269780
TU306130 lncRNA downstream 8981 3928484 ~ 3928707 (-) True G269776
TU306125 lncRNA downstream 12063 3925300 ~ 3925625 (-) True G269771
TU306109 lncRNA downstream 23169 3914087 ~ 3914519 (-) True G269755
TU306093 lncRNA downstream 31629 3905807 ~ 3906059 (-) True G269739
TU306578 lncRNA upstream 70014 4007931 ~ 4008235 (-) True G270154
TU306581 lncRNA upstream 74001 4011918 ~ 4012132 (-) True G270157
TU306547 lncRNA upstream 108430 4046347 ~ 4051738 (-) True G270125
TU306620 lncRNA upstream 198907 4136824 ~ 4137054 (-) True G270195
TU306622 lncRNA upstream 200916 4138833 ~ 4204783 (-) True G270197
CI01000065_03845250_03848939.mRNA mRNA downstream 88747 3843527 ~ 3848941 (-) True CI01000065_03845250_03848939
CI01000065_03794501_03806693.mRNA mRNA downstream 130995 3793860 ~ 3806693 (-) False CI01000065_03794501_03806693
CI01000065_03701147_03703052.mRNA mRNA downstream 234636 3701131 ~ 3703052 (-) True CI01000065_03701147_03703052
CI01000065_03694059_03694764.mRNA mRNA downstream 242924 3693807 ~ 3694764 (-) True CI01000065_03694059_03694764
CI01000065_03648940_03692253.mRNA mRNA downstream 245320 3648403 ~ 3692368 (-) True CI01000065_03648940_03692253
CI01000065_03944604_03949933.mRNA mRNA upstream 6664 3944581 ~ 3950187 (-) True CI01000065_03944604_03949933
CI01000065_04027497_04039742.mRNA mRNA upstream 88593 4026510 ~ 4039742 (-) True CI01000065_04027497_04039742
CI01000065_04070422_04072088.mRNA mRNA upstream 132287 4070204 ~ 4072088 (-) True CI01000065_04070422_04072088
CI01000065_04178828_04180116.mRNA mRNA upstream 240041 4177958 ~ 4180116 (-) True CI01000065_04178828_04180116
CI01000065_04318691_04330504.mRNA mRNA upstream 380518 4318435 ~ 4330782 (-) True CI01000065_04318691_04330504
TU305996 other downstream 127445 3807558 ~ 3810243 (-) True G269656
TU305995 other downstream 127528 3807558 ~ 3810160 (-) False G269656
TU306020 other downstream 163394 3773880 ~ 3774294 (-) True G269679
TU305632 other downstream 625208 3308788 ~ 3312480 (-) True G269348
TU305628 other downstream 625284 3308788 ~ 3312404 (-) False G269348

Expression Profile