RNA id: TU306269



Basic Information


Item Value
RNA id TU306269
length 279
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G269908
representative True

Chromosome Information


Item Value
chromosome id CI01000065
NCBI id null
chromosome length 4956624
location 4235055 ~ 4235333 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTGAGCTCTGTGAACAGCCAGCCTCTTTTGCAATGACCTTTTGTGTCTTGCCCTCCTTGTGCAAGGTGTCAATGGTCATCTTTTGGACAACTGTCAAGTCAGCAGTCTTCCCCATGATTGTGTAGCCTACAGAACTAGACTGAGAGACCATTTAAAGGCCTTTGCAGGTGTTTTGAGTTAATTAGCCGATTAGAGTGTGGCACCAGGTGTCTTCAATATTGAACCTTTTCACAATATTCTAATTTTCTGAGATACTGAATTTGGGATTTTCCTTAGTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU306268 lncRNA upstream 368 4233690 ~ 4234687 (+) True G269907
TU306190 lncRNA upstream 222578 4012248 ~ 4012477 (+) True G269833
TU306168 lncRNA upstream 258660 3976075 ~ 3976395 (+) True G269814
TU306165 lncRNA upstream 266414 3968428 ~ 3968641 (+) True G269811
TU306160 lncRNA upstream 271892 3962941 ~ 3963163 (+) True G269806
TU306273 lncRNA downstream 8866 4244199 ~ 4244541 (+) True G269912
TU306276 lncRNA downstream 19358 4254691 ~ 4254968 (+) True G269915
TU306278 lncRNA downstream 43735 4279068 ~ 4279371 (+) True G269917
TU306280 lncRNA downstream 48257 4283590 ~ 4283878 (+) True G269919
TU306313 lncRNA downstream 98587 4333920 ~ 4334177 (+) True G269948
CI01000065_04183838_04222038.mRNA mRNA upstream 12588 4183838 ~ 4222467 (+) True CI01000065_04183838_04222038
CI01000065_04115052_04165049.mRNA mRNA upstream 69626 4112278 ~ 4165429 (+) True CI01000065_04115052_04165049
CI01000065_04081314_04103789.mRNA mRNA upstream 131094 4081314 ~ 4103961 (+) True CI01000065_04081314_04103789
CI01000065_04044257_04051771.mRNA mRNA upstream 182772 4044257 ~ 4052283 (+) True CI01000065_04044257_04051771
CI01000065_04008274_04010105.mRNA mRNA upstream 224861 4008274 ~ 4010194 (+) True CI01000065_04008274_04010105
CI01000065_04247989_04251347.mRNA mRNA downstream 10330 4245663 ~ 4251797 (+) True CI01000065_04247989_04251347
CI01000065_04277095_04282609.mRNA mRNA downstream 40675 4276008 ~ 4283199 (+) True CI01000065_04277095_04282609
CI01000065_04361047_04363753.mRNA mRNA downstream 125604 4360937 ~ 4363839 (+) True CI01000065_04361047_04363753
CI01000065_04520939_04539169.mRNA mRNA downstream 285515 4520848 ~ 4539261 (+) True CI01000065_04520939_04539169
CI01000065_04547859_04555579.mRNA mRNA downstream 312526 4547859 ~ 4555579 (+) True CI01000065_04547859_04555579
TU305478 other upstream 681931 3552804 ~ 3553124 (+) False G269225
TU305428 other upstream 772127 3458957 ~ 3462928 (+) True G269181
TU304991 other upstream 1596850 2608907 ~ 2638205 (+) True G268805
TU304676 other upstream 1995057 2239159 ~ 2239998 (+) True G268525
TU303653 other upstream 3152400 1082153 ~ 1082655 (+) True G267577

Expression Profile